Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi496g00054 ATGAACGAGTTTGGCGAAGGATGTAGCAGGATGAATGGGGAGGAGCCAATGATGGAGGCATTGAATGATTTGAGGTTGGAATCAGAAGAGGTGCGTAGTGGTGAAGACACAGAAGGTGATTACGTTGTGAACGATGAAGAAGAAGCAGAGGATAAGGGGGGAGGTTTTCGGTATAGGTGTGTTGAGGATAACGGCGGAAACAATGATGGTGAACGTATAGAAATTAATAATGTCGGGGATATAGTGAAGTTGGATTTAAAGAATTTATGCCCGCATGAGGTTGGTTTATATTATGATTTTCAGAGTTTGGAATTGGCTGCCGAGTTTTATAAAAGTTACGCAAGGAAGAACGGCTTTGTTGGTCGTGAGGGTAAGAAAAGGCACAATAAAGATGGAGTTGTGATACAACAAGCGTTTGTTTGCAACAGGGAAGGATTCAGAAGAGAGAGAGAGATGGTGGCACCCCGTCACAACGAAAACGACGTGCTAATACGAGGTGTGGCTGTAAGGTATACGTCCACCACACATATTGGCTGCATTCGCTCGTCAGGCAGGGGGTATGAGAAGGTAGGGTTTCGTAAAAAGCACATGTACAACCAGATTGGTCAGCAAAGGCGTAACCAAGGCGATGATGGGAAAAGTGCTATAGGCTATCTACAATGGTTGGGCTTAAAGGATTCCCTAATGTGTTGTAAACACGTAGAAGATGCAAATGGGAGCGTCAGACACATGTTTTGGTCTGATGGTCTAAGCCAGATTAGCTACCAAGCATTCGGTGATGTTTTAGCATTTGATGCTACTTACCGTAAGAACAAGTATCGATATCCCGTGGTTATATTTTCAGGTGTCAATCACCATAACCACACAACTATTTTTGCATGTGGGATAGTTTCAAATGAGACAGAAGAGACTTATGTTTGA 921 0.4332 MNEFGEGCSRMNGEEPMMEALNDLRLESEEVRSGEDTEGDYVVNDEEEAEDKGGGFRYRCVEDNGGNNDGERIEINNVGDIVKLDLKNLCPHEVGLYYDFQSLELAAEFYKSYARKNGFVGREGKKRHNKDGVVIQQAFVCNREGFRREREMVAPRHNENDVLIRGVAVRYTSTTHIGCIRSSGRGYEKVGFRKKHMYNQIGQQRRNQGDDGKSAIGYLQWLGLKDSLMCCKHVEDANGSVRHMFWSDGLSQISYQAFGDVLAFDATYRKNKYRYPVVIFSGVNHHNHTTIFACGIVSNETEETYV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi496g00054 306 PANTHER OS01G0519700 PROTEIN 177 306 - -
Sebi496g00054 306 Pfam FAR1 DNA-binding domain 108 153 IPR004330 -
Sebi496g00054 306 Pfam MULE transposase domain 261 305 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi496g00054 Sebi-Chr496 658382 659980 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi496g00054 FAR1 1.4e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi496g00054 - - tpra:123886262 204.527