Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi496g00044 ATGAGAAGACCGAAATCAAAGGACTTTAAGAAGCAACACCGTGCCTCAGAAGAGGAGGAGATAAAGCTCTTGGATTCATGGATCCAAAGCCAGAAACCAGACTCTGGTTCAAACCCAATGTCTCTTCCTCCTCTCCCCAAAAACTCCCCCGTTGGGCGCCTTGACGATAACAGCTTCGCCCACTTGCCCCTCTCCAACAGAACCAAAGATGGCTTGCGAGAAGCCAAGTTCGTTTCTATGACCGACATACAGAGGGCTTCTCTTCCCCACGCGCTTTGTGGTCGTGACATTCTCGGCGCCGCCAAAACTGGCTCCGGCAAAACCCTCGCTTTCATTATCCCTGTGAGTGCTTCACTTGATTTTAGGGTGTTGGAGAAGTTATATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATCATTATATCACCTACAAGAGAATTAGCTGGTCAGATATTTGATGTGTTGAAGTGTGTTGGGAAGTACCATGGTTTTAGTGCTGGCCTCCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAAGAACGTGTCAGTGAACTCAACATATTGATCTGCACACCCGGTCGCCTTCTACAACACATGGATGAAACTCCCAATTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCGTATTCTTGATAGTGGATTCAAGAAGGAACTAAATGCAATCATCTCACAACTACCAAAGCGCAGACAAACCTTGCTTTTCTCAGCAACTCAAACAAAGTCGATCCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTATCTGAGCGTGCACGAAGAGTCTGTGACTGCCACTCCTACTCTCTTGAAGCAAATTGTGATGATTGTTCCCCTGGATCAAAAGCTAGATATGCTGTGGAGTTTCATAAAGACACATCTACAGTCAAAAATACTTGTTTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCGTACCGCTGAAGTGCCTTCACGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAAAAGCGTTCAGTTCTCTTCTCCACTGATGTGGCTGCAAGAGGACTTGATTTTAATAAAGCAGTTGACTGGGTTGTTCAGGTTGATTGTCCTGAAAATGTAGCATCTTACATACATAGAGTTGGCCGTACTGCTCGTTATAAGTCTGGTGGAAAGTCAGTTTTATTTCTACTGCCTTCAGAAATTCAAATGCTTGAAAGGTTAAAAGCAGCAAAGGTTCCAGTGCATTTTAACAAGCCAAGGAAAGAACTACTGCAACCAGTTTCTGGTTTGTTGGCATCTTTACTGGCCAAGTACCCAGACCTGCAGCATCGGGCTCAAAGGGCATTTGTCACATATTTGAGATCCATCCATATCCAAAAGGATAAAGAGATCTTTGATGTAATGAAACTGCCTATTGATGAATATTCAGCATCATTAGTTTTAGTTGAACCAGAGGATGCAGACAAGGAAAATATCTTGGAGGTTTCAGGAAAGAAGATAGACGATGTTGTTTTCAAAGATGAGGAAGCTGAAAATGATCTTCTTCAGGCAGCCGATACCTTAAATGAAGGCGAATTGAAGTCATCTGAAATTGGAGAAATAATACCAGCAACTCGTGTATTGAAGAAAAAGAAGCTTAAGATTAATGTACATAGACCACTGGGGACTAGGGTTGTATTTGACGATGAAGGCAACACACTTCCTCCACTAGCTAGGATTGCTGACACACAAAGTGGCAAGGAAACATTGCTACTTGACCCAGACCAAAAAGCTGAATACTATAAAAGGATGCGAGAGGATTTGAAAAAGGCAGACAAGGAAGACAAACTTCTAGAACGTCAGCGGCGTAGAGAAAAAAGAATCAAGCAGAAGATGAAGTGGAAGTCAGGGAATGTGGAAGAAGAGGACGACCAAGTTGATATTTCTGGGTCAGAGGATGAAACTGTAGATAGACGACATAAAAAGAGTAAAGTATACTTCAATAGCGACAGTGATGAGGGTGAAAGAAATGAAGTCACAGGGAATGCAGGTATTAGTGCTGGCAACATTACTTTGGAGGAGCAAGAAGCGCTGGCTTTGAAATTGTTAAATTCCATGCACTCATAG 2166 0.4294 MRRPKSKDFKKQHRASEEEEIKLLDSWIQSQKPDSGSNPMSLPPLPKNSPVGRLDDNSFAHLPLSNRTKDGLREAKFVSMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVSASLDFRVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKCVGKYHGFSAGLLIGGRKDVDMEKERVSELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKILVFLSSCKQVKFVFEAFKKLHPGVPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLERLKAAKVPVHFNKPRKELLQPVSGLLASLLAKYPDLQHRAQRAFVTYLRSIHIQKDKEIFDVMKLPIDEYSASLVLVEPEDADKENILEVSGKKIDDVVFKDEEAENDLLQAADTLNEGELKSSEIGEIIPATRVLKKKKLKINVHRPLGTRVVFDDEGNTLPPLARIADTQSGKETLLLDPDQKAEYYKRMREDLKKADKEDKLLERQRRREKRIKQKMKWKSGNVEEEDDQVDISGSEDETVDRRHKKSKVYFNSDSDEGERNEVTGNAGISAGNITLEEQEALALKLLNSMHS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi496g00044 721 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 88 271 IPR014001 -
Sebi496g00044 721 CDD SF2_C_DEAD 285 416 - -
Sebi496g00044 721 SMART ultradead3 76 288 IPR014001 -
Sebi496g00044 721 CDD DEADc_DDX10 68 274 - -
Sebi496g00044 721 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 217 225 IPR000629 -
Sebi496g00044 721 Pfam DEAD/DEAH box helicase 81 259 IPR011545 GO:0003676|GO:0005524
Sebi496g00044 721 SMART helicmild6 324 407 IPR001650 -
Sebi496g00044 721 MobiDBLite consensus disorder prediction 640 696 - -
Sebi496g00044 721 Pfam Helicase conserved C-terminal domain 297 406 IPR001650 -
Sebi496g00044 721 PANTHER RNA HELICASE 23 607 - -
Sebi496g00044 721 Gene3D - 48 277 IPR027417 -
Sebi496g00044 721 SMART DUF4217_3 446 505 IPR025313 -
Sebi496g00044 721 MobiDBLite consensus disorder prediction 25 57 - -
Sebi496g00044 721 Pfam Domain of unknown function (DUF4217) 451 503 IPR025313 -
Sebi496g00044 721 Coils Coil 614 634 - -
Sebi496g00044 721 Gene3D - 282 537 IPR027417 -
Sebi496g00044 721 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 293 455 IPR001650 -
Sebi496g00044 721 MobiDBLite consensus disorder prediction 664 690 - -
Sebi496g00044 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 427 IPR027417 -
Sebi496g00044 721 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 57 85 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi496g00044 Sebi-Chr496 508390 513652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi496g00044 57 424 Eukaryotic Initiation Factors Gene Family AT3G19760 28.378 1.34e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi496g00044 K14776 - gmx:100792106 1201.42