Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi496g00032 | ATGCCTATTACCAATACTTCTCCAACTATCATGACCAAGTGGTTTTCTGGAATGGTAAAAGCAGCAACAAGGTGTAAGGAAGTTTTTGCTTTGGGGGTGTTGGCTGACATTGGTGGTTCTGTAGTTGGACTATTCATGAAAGCTATGGATAGAGTTCTTTTTGTTGCATTTACCTGCATTTTGGCACTAGGAGGGTCAATAATAGGAACAATTGCAGGAGCCATCAAAGGCCATACCACAGAAACTGGTTTTCTTGATGGGGCTGGCAAAGGAGCAATCACAGGAGCTATTGCAGCCATAGAATTGTCAAATTTTGCTGCATTTGATGAGCAATTTTCCAAGTTTGCCCTGTTAAGCAGTTTATTCAATGGGAAAGTCTTTATGGAATGGATATGTCCTGCTGCTGCACAAGCCTATCAGATGCATATCAACACAGGAGAAACAGCTTACATTCATGATGTCAGAGGAGTAACAGGGATGCCCCAGAATTTTATTCTGAAGCTTCCTTTTCAGCAATTCAACTCCAACAAAATGATGAAGTTACACAATAAGTCATGCTGCTCAATTTGCTTTCAGGATTTTGAGGAAGGAGAGTTGGTGAGAATACTTCCAAAATGTTGCCACCTTTTTCATTTAGAATGCATAGACAAGTGGTTAGTCCAACAAGGATCATGCCCAATGTGTAGAACTTATGTTCCTGACCACATTCATGAACAGTAG | 720 | 0.4069 | MPITNTSPTIMTKWFSGMVKAATRCKEVFALGVLADIGGSVVGLFMKAMDRVLFVAFTCILALGGSIIGTIAGAIKGHTTETGFLDGAGKGAITGAIAAIELSNFAAFDEQFSKFALLSSLFNGKVFMEWICPAAAQAYQMHINTGETAYIHDVRGVTGMPQNFILKLPFQQFNSNKMMKLHNKSCCSICFQDFEEGELVRILPKCCHLFHLECIDKWLVQQGSCPMCRTYVPDHIHEQ | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi496g00032 | 239 | SMART | ring_2 | 187 | 228 | IPR001841 | - | |
| Sebi496g00032 | 239 | Pfam | Ring finger domain | 187 | 229 | IPR001841 | - | |
| Sebi496g00032 | 239 | SUPERFAMILY | RING/U-box | 181 | 235 | - | - | |
| Sebi496g00032 | 239 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 43 | 230 | IPR044523 | - | |
| Sebi496g00032 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 235 | IPR013083 | - | |
| Sebi496g00032 | 239 | ProSiteProfiles | Zinc finger RING-type profile. | 187 | 229 | IPR001841 | - | |
| Sebi496g00032 | 239 | CDD | RING-H2_EL5-like | 186 | 229 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi496g00032 | Sebi-Chr496 | 387730 | 389266 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi496g00032 | 57 | 232 | C3H Transcription Factor Family | AT5G66070 | 36.269 | 1.02e-32 | 117 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi496g00032 | - | K19041 | gmx:100305612 | 301.982 |