Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi496g00030 ATGAGACATGGTGTGCACAATCACAAGAACCATGAACCTTTTGTCAACCAATCAAAAGCCCCTTCTCATCAAACTTACCAATCACCTGAGAAATTTTCTTCAGCACCTCAAAAACCTGTTCATAGGTTAGATACAATTCTTGGGAAGCCATTTGAGGATGTTAGGAAATTCTATACACTTGGGACAGAATTGGGAAGAGGCAAATTTGGGGTGACTTATCTCTGCATTGAGAAATCAACTGGCTTGCAATATGCTTGCAAGTCCATTTCAAAGAGAAGCAATGTTAATAAGGAGGATATAAAGAGGGAGATTCAAATTATGCAGCATTTGAGTGGACAACCCAACATTGTTGATTTCAAAGGTGCTTATGAGGATAAACAATCTGTTCATGTTATTATGGAGCTTTGCTCAGGTGGTCAACTTTATGATAGGATTATTGCCAAGGGGCACTATAGTGAAAGGGATGCTGCTTCAATATGTATAGAAATAGTTAATGCTATCCATATTTGCCATTCTATGTGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTATTTTCCAGTAAGGATGACAAGGCACTCCTCAAGGCCACAGATTTTGGCTTGTCTGCCTTCATTGAAGAAGGAAAGGTGTATCAAGATTTAGTTGGCAGTCCTTATTATGTGGCTCCAGAAGTTTTACGTCATAAATATGGGAAGGAAGTGGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTAGTGGTGTGCCTCCATTTTGGGGAGACACGACAAAGGAAATATTTGGTGCCATTTTGAAATGTCATATTGATTTTGAAAGTCATCCATGGCCAACCATATCAAACAGTGCTAAGGACCTTATTAGGAAGATGCTTACACAGGATCCAAAGAAACGCATTACCTCTGCTCAGATTCTAGAATCAATGTACTGTAATAATCAGAGCACCCCTGGATTAAAGAAGGTGAAAATGCTTCTGACAAGCCAACAGATAATGATGAGGAGTGGATCCCAACAGCGAAGCAAGCTTTTCTAA 1041 0.3929 MRHGVHNHKNHEPFVNQSKAPSHQTYQSPEKFSSAPQKPVHRLDTILGKPFEDVRKFYTLGTELGRGKFGVTYLCIEKSTGLQYACKSISKRSNVNKEDIKREIQIMQHLSGQPNIVDFKGAYEDKQSVHVIMELCSGGQLYDRIIAKGHYSERDAASICIEIVNAIHICHSMCVMHRDLKPENFLFSSKDDKALLKATDFGLSAFIEEGKVYQDLVGSPYYVAPEVLRHKYGKEVDIWSAGVILYILLSGVPPFWGDTTKEIFGAILKCHIDFESHPWPTISNSAKDLIRKMLTQDPKKRITSAQILESMYCNNQSTPGLKKVKMLLTSQQIMMRSGSQQRSKLF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi496g00030 346 ProSiteProfiles Protein kinase domain profile. 58 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi496g00030 346 FunFam Calcium-dependent protein kinase 5 141 320 - -
Sebi496g00030 346 Gene3D Transferase(Phosphotransferase) domain 1 141 336 - -
Sebi496g00030 346 Gene3D Phosphorylase Kinase; domain 1 60 140 - -
Sebi496g00030 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Sebi496g00030 346 MobiDBLite consensus disorder prediction 14 34 - -
Sebi496g00030 346 FunFam Calcium-dependent protein kinase 1 60 140 - -
Sebi496g00030 346 CDD STKc_CAMK 57 309 - -
Sebi496g00030 346 Pfam Protein kinase domain 58 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi496g00030 346 MobiDBLite consensus disorder prediction 1 39 - -
Sebi496g00030 346 SMART serkin_6 58 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi496g00030 346 PANTHER SERINE/THREONINE-PROTEIN KINASE 53 323 - -
Sebi496g00030 346 SUPERFAMILY Protein kinase-like (PK-like) 44 328 IPR011009 -
Sebi496g00030 346 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi496g00030 Sebi-Chr496 354331 356272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi496g00030 25 309 EF-hand Containing Proteins AT1G50700 68.243 6.80e-153 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi496g00030 Pkinase 7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi496g00030 K13412 - gmx:100798651 476.863