Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi496g00028 | ATGCCCTCAGCTCAAGATCCATTCTACGTTGTCAAGGAGGAGGTTCAAGAATCTATTGATAAGTTGCAATCTACTTTTCACCAATGGGAAAAAACTTCTGATACTGGTGAGCGAGAGCATCTTGCAAAGGAAGTTCTTGCTGGTTGTGAAAGTATTGAATGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCATCTAGAGAACCTTCTTGGTATGGCATTGATGAAGTGGAGGTTGAAAATCGGAGGAGGTGGACCAGCAGTGCTCGCACTCAGGTGCGCACAACGAAGCAATCAGTGGAAGCTGGGAAGGGCTCAAATACAACAAATCATGCAAGTCCAAATGGGATGCACAGGGAATTAATGAGGCTTCCTGATTCTCATCAAACTGCATCCAACCAATATGCTGCCCGGGATAATGATGATTTCATAGAATCAGAATCAGATAGGCAGATGCTTCTTATAAAGAAACAGGATGAGGAGTTGGATGAGCTCAGTATAAGTGTACAAAGAATTGGAGGTGTTGGACTTACGATACATGAAGAGCTCCTTGCACAGGAAAAGATTATAGATGAACTGGGTAATGAGATGGACAGCACATCTAATCGTCTAGATTTTGTCCAAAAAAAAGTGGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATTTTGGGTTTGCTGGCCCTGTTCATTTTCCTCTTTATCTTGGTATTCTTCACCTAG | 738 | 0.4282 | MPSAQDPFYVVKEEVQESIDKLQSTFHQWEKTSDTGEREHLAKEVLAGCESIEWQVDELDKAISVASREPSWYGIDEVEVENRRRWTSSARTQVRTTKQSVEAGKGSNTTNHASPNGMHRELMRLPDSHQTASNQYAARDNDDFIESESDRQMLLIKKQDEELDELSISVQRIGGVGLTIHEELLAQEKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT | 245 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi496g00028 | 245 | SMART | tSNARE_6 | 148 | 215 | IPR000727 | - | |
| Sebi496g00028 | 245 | CDD | SNARE_NTD_AtSYP61-like | 5 | 102 | - | - | |
| Sebi496g00028 | 245 | MobiDBLite | consensus disorder prediction | 87 | 119 | - | - | |
| Sebi496g00028 | 245 | FunFam | Syntaxin 10 | 3 | 104 | - | - | |
| Sebi496g00028 | 245 | FunFam | syntaxin-61 isoform X1 | 156 | 217 | - | - | |
| Sebi496g00028 | 245 | CDD | SNARE_Qc | 156 | 213 | - | - | |
| Sebi496g00028 | 245 | Gene3D | - | 2 | 104 | - | - | |
| Sebi496g00028 | 245 | PANTHER | GOLGI SNARE BET1-RELATED | 116 | 242 | - | - | |
| Sebi496g00028 | 245 | Coils | Coil | 12 | 32 | - | - | |
| Sebi496g00028 | 245 | Coils | Coil | 191 | 211 | - | - | |
| Sebi496g00028 | 245 | Pfam | SNARE domain | 190 | 241 | IPR000727 | - | |
| Sebi496g00028 | 245 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 153 | 215 | IPR000727 | - | |
| Sebi496g00028 | 245 | SUPERFAMILY | SNARE fusion complex | 151 | 215 | - | - | |
| Sebi496g00028 | 245 | Gene3D | - | 160 | 224 | - | - | |
| Sebi496g00028 | 245 | SUPERFAMILY | t-snare proteins | 5 | 101 | IPR010989 | GO:0016020|GO:0016192 | |
| Sebi496g00028 | 245 | MobiDBLite | consensus disorder prediction | 89 | 116 | - | - | |
| Sebi496g00028 | 245 | Pfam | Syntaxin 6, N-terminal | 6 | 98 | IPR015260 | GO:0016020|GO:0048193 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi496g00028 | Sebi-Chr496 | 345698 | 349282 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi496g00028 | 55 | 245 | SNARE and Associated Proteins | AT1G28490 | 69.792 | 2.38e-93 | 271 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi496g00028 | K08500 | - | gmx:100793612 | 384.8 |