Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi496g00021 ATGATTTCTGGTAGGTGTGCAGCTTGCAAGAGTCAGAGAAGAAGGTGCCCTTCAGATTGCATTTTCTCTCCATATTTCCCTGCCAATGATCCTCAAAGATTTGCTTATGTTCACAGAATATATGGTGGTAGCAATGTTGGAAAAATGCTTCAGCAAATTAGTCCCTATTTACGTGAACAAGCTGCAAATTCTATGTATTTAGAAGCACAATGTAGGATTGAAGACCCTGTTTATGGGTGTGTTGGGATTATCTCTAAATTGCATCAACAAATCCACAATACAGAAGTTGAGCTAGCCAAAATCCAAACTCAAATTGCTTATCACAAGCTCATCCAAAATCCACAGGTTGAAGCTGAAGAATCAAACTTCAATGTCTTGCCAGCACAAAGCAACAGCATGGGGCAGTTTCAGTGGCCAAGTCAAGCTCCTTGGTTCAATTAA 441 0.4014 MISGRCAACKSQRRRCPSDCIFSPYFPANDPQRFAYVHRIYGGSNVGKMLQQISPYLREQAANSMYLEAQCRIEDPVYGCVGIISKLHQQIHNTEVELAKIQTQIAYHKLIQNPQVEAEESNFNVLPAQSNSMGQFQWPSQAPWFN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi496g00021 146 Coils Coil 84 104 - -
Sebi496g00021 146 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Sebi496g00021 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 117 - -
Sebi496g00021 146 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi496g00021 Sebi-Chr496 267424 268002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi496g00021 1 123 AS2 family AT3G26660 56.911 1.77e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi496g00021 LOB 9.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi496g00021 - - gmx:100790640 234.572