Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi496g00006 ATGACATTTAGAGGGAAAAGACTTGTCATGGATAATGAGCTTGATCATTTCTTCCCTGAAAACAAGACTACTTCTCATGAAGATGATCATCAAATGGTGCACCATGTAGATAATACCGGTTGCAACAGAACAACAGAGGAAGATGCAGCATCTGAAACTATGGATGATAATAAGAGAACTGAGTTTGTAGCTTTGGTAGCTGAATTGCACCAGATGAATGCTGAAAATCAACGTTTAAGAGAGTTGGTGGATGAGGTGAACAATAACTACAATGCCTTACACATGCAACTTATCAAGCTAATGCAGAAGCAGCAGGATAACCATAGGATTAACCAAGTCAAAGAGGAGAAAGGTAAGGGAGAAGATGTGGATCCAAGGCCAATTTTAGACATGGGATTTGCTGAAAAGGATGAGAGCAAACTTAGAGAAAGCAAAAGCATGGTTGACTTGATGGATTGCAAGGCCAGAAAATTAGATAATAATGTTGTTTTGGAGGCTGCAGATAATAATAAGGTGGATTGTGGAAGCAGAGAAAATTCAAAAAGCAGAATGGATCAAGCATTATTTAACAAAGTTCCTAGATTGAGTTCTTTGGGGGACCAAGCATCAGAAACTATGTCAATGATCAAGAAAGCTCGTGTATCAGTTAGAGCAAGATCAGAAACTCCTATGATTGCAGATGGATGTCAATGGAGAAAGTATGGACAAAAGATGGCGAAAGGGAATCCTTGTCCACGGGCTTATTATCGTTGCACAATGAGTACTGGTTGTCCTGTACGGAAACAAGTACAAAGGTGTGCTGAAGATCGAAGTGTGTTGATCACTACATATGAAGGGCAGCATAACCATCCACTGCCTCCCACTGCACAAGCAATGGCATCCACCACATCTGCAGCTGCCTCAATGCTTCTTTCAGGATCAATGCCAAGCTCAGATGGCCTAATTAATCCATCCATATTACAAACTGCTGCAATTCCCTGTTCACAAAACATGGCAACTCTCTCTGCCTCAGCCCCATTTCCAACCATCACACTTGATCTCACTCAAACTGCTACCAATTCCTCACAGCTACAAAGGGAACCACAGGGACAACTCAGCCTCCTAACTCCACTTTTGGCTCACAAGTTTATGTCAGCTCCAAAAGTTTTTGGACAAGCCCTTTGTGATCAAACTAATAAGCTCTCTGCCTTCAATGAGTCTCAGGGCATAGACAGTAACACAGCTTCATCATATGCTGACACATTAAATGCAGCCACGGCTGCTATAACTGCAGACCCAAATTTCACTGCAGCTCTTGTGGCTGCTATTACATCTATGATGGGAAGTTCACATCCAAACAACAATAATGCATAA 1353 0.4176 MTFRGKRLVMDNELDHFFPENKTTSHEDDHQMVHHVDNTGCNRTTEEDAASETMDDNKRTEFVALVAELHQMNAENQRLRELVDEVNNNYNALHMQLIKLMQKQQDNHRINQVKEEKGKGEDVDPRPILDMGFAEKDESKLRESKSMVDLMDCKARKLDNNVVLEAADNNKVDCGSRENSKSRMDQALFNKVPRLSSLGDQASETMSMIKKARVSVRARSETPMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPSILQTAAIPCSQNMATLSASAPFPTITLDLTQTATNSSQLQREPQGQLSLLTPLLAHKFMSAPKVFGQALCDQTNKLSAFNESQGIDSNTASSYADTLNAATAAITADPNFTAALVAAITSMMGSSHPNNNNA 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi496g00006 450 Pfam WRKY DNA -binding domain 227 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi496g00006 450 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 43 448 IPR044810 GO:0003700
Sebi496g00006 450 ProSiteProfiles WRKY domain profile. 220 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi496g00006 450 FunFam probable WRKY transcription factor 31 210 287 - -
Sebi496g00006 450 Coils Coil 62 103 - -
Sebi496g00006 450 Gene3D WRKY domain 210 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi496g00006 450 SUPERFAMILY WRKY DNA-binding domain 218 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi496g00006 450 SMART WRKY_cls 225 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi496g00006 Sebi-Chr496 74399 76776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi496g00006 38 444 WRKY Transcription Factor Family AT1G62300 47.454 1.91e-102 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi496g00006 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi496g00006 - - vum:124848283 523.857