Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi494g00021 ATGGGAAAGTCAAGCAAGAAATCAGCCACCAAAGTTGACGCAGCTACCGCTGTGGCTCCGACATCGAAATCTGCCAAAAAGGGCAAGAGGCAGGCTGATGAGCTTGAGAAGCAATTGAGTGCAAAGAAGCAGAAGGTAGAAGAGGTTGCTCAGAAGCAAAAGAAGGAAGCAAAGGTACAAAAAAAGAAGGTGGAAAGTAGTTCAGATGATTCTTCATCTGAATCTGAAGATGAGAAACCAGCAGCAAAAGTTGCTGTTCCTTCAAAAAAGGCACCTGCTAAAAATGTCGCTCTTATCCAAGCAAAGAAAGGCAAGCCAGCTCCCAGCTCCAGTTCTTCTGAATCTTCTGAAGATGACTCCTCTGATGAGGATGAAGTGAATGCAAAGAAACAAAAGAAAGAAGTGGTTGCTGAGAAGCAAAAGAAGGAAGCAAAGGTGCAAAAGAATAAGAAGGAAAGTAGTTCAGATGATTCTTCAGAATCTGAAGATGAGAAACCTGCATCAAAAGTTTCTGTTCCATCAAAAAATCAACCTGCTAAAAATGGCACTCTTAGTACTCCAGCAAAGAACGCAAAGCCAGCTAGCAGTTCCAGTTCTTCTGAATCCTCTGATGATGACTCCTCTGACGAAAATGAAGCTCCAAAACCGAAGGTGGTACCTTCTGCAGCAGGTAAGAATGGACCTGCTTCTACAAAGAAAATTCAGCAAAGTGAAACCTCAGAGTCTGATTCTGATAGCAGCTCTGATGAGGACAATGTAACTAAACCATCTAAGAAGCCTGCTGCTGCTGGTCTTGGTAAGAATGTGCCTGCCAAGAAGGTTGATTCAGACTCATCCTCTGATAGTAGTTCTGATGAAGAGGATGATAATAAGAAGAAACCAGCTGCTGCTGTGTCCAAAAAGCTGCCTGCATCTGCAGTTGCTCCAAGTAAGAAAGTTGAGACAAGTGAAAGCTCAGATGATGAATCAAGTGACAGCTCTGATGATGACAACGATACAAAGCCTACTGTAACAGCTGTGTCCAAGCCTTCTGCTGCTGCTAAAAAGAATGTTGACAGCTCAGATTCTGATGATGATAGCAGCTCTGATGAAGACAATCTTTTCTTTATCAAGTTATCAATGATTGCAATTGGGATTCAAATTCTGTTGCAGAAACCAACAAAAGTTTCTAATGGTAACAAGAAACAAGCAACAGTTGCGAAGGCAGCTAAAAAGGAGTCTAGCTCAGAGAGTGATTCATCAGATGATGAGGATAAGATGGATGTCGACGATGATGATAGTTCTGATGAAAGTGATGAAGAGCCACCGAAGAAAAAGCATCCCGTGAAAGACTCAGAGGAAAGCAGTGATAGTTCTGACGACAGTGACGAGGAAGATGAGAAACCCTCTAAAACTCCTCAGAAAAAAGTTAAGGATGTGGAGATGGTTGATGCTGCCTCGGCTGGAAAGAATGCTCCTAAAACCCCAGTTACACCAAAAGAACAAAATGGCACTTCAAAGACATTATTTGTTGGAAACTTGGAAAATTTCTTCAAAGATTGTGGTGAGATTGTTGATGTCCGCCTAGCTACAGATGATGATGGGAGGTTTAAAGGCTTTGGACATGTAGAGTTTGCAACAGCAGAGGCAGCCCAAAATGCGCTGGAGTTAAATGGGCAAGAATTGTTGCAACGTGCTGTCCGGCTTGATTTAGCTCGGGAAAGGGGTGCTTATACCCCCACAAGCAACAACAACTGGAACAATTCATTCCAGAAGGGTGGAAAAGGCCAGTCTCAAACAGTATTTGTGAAAGGTTTTGATAGATCTCTTGGGGAAGATGAGATAAAATCTAGTCTGCAGGAGCATTTCGGTTCTTGTGGGGAAATTACAAGGATATCAGTTCCGAAAGATTATGATTCTGGTTCTGTTAAGGGGTTTGCTTACTTGGACTTCAGTGATGGTGATAGCTTGAATAAAGCACTTGAACTTCATGAAAGTGAACTTGGTGGTTATACCTTGTCAGTTGATGAAGCAAAACCTAGAGGTGATAATCAAGGTTCAGGTGGTAGAGGTGCAGGAGGAAGGAGTGGTGGCGGTAGATTTGGTGGTGGAAGGAGTGGTGGTGGTAGAGGTCAATTTGGTGGAAGGGGTGGTGGTGGCAGAGGTGGTAGAGGAAGAGGTGGTGGTAGGGGTCGAGGAACACCTAACAGACCAAGTCTTGCTGCGGAAGGCACAGGTATATATAATTAG 2229 0.4338 MGKSSKKSATKVDAATAVAPTSKSAKKGKRQADELEKQLSAKKQKVEEVAQKQKKEAKVQKKKVESSSDDSSSESEDEKPAAKVAVPSKKAPAKNVALIQAKKGKPAPSSSSSESSEDDSSDEDEVNAKKQKKEVVAEKQKKEAKVQKNKKESSSDDSSESEDEKPASKVSVPSKNQPAKNGTLSTPAKNAKPASSSSSSESSDDDSSDENEAPKPKVVPSAAGKNGPASTKKIQQSETSESDSDSSSDEDNVTKPSKKPAAAGLGKNVPAKKVDSDSSSDSSSDEEDDNKKKPAAAVSKKLPASAVAPSKKVETSESSDDESSDSSDDDNDTKPTVTAVSKPSAAAKKNVDSSDSDDDSSSDEDNLFFIKLSMIAIGIQILLQKPTKVSNGNKKQATVAKAAKKESSSESDSSDDEDKMDVDDDDSSDESDEEPPKKKHPVKDSEESSDSSDDSDEEDEKPSKTPQKKVKDVEMVDAASAGKNAPKTPVTPKEQNGTSKTLFVGNLENFFKDCGEIVDVRLATDDDGRFKGFGHVEFATAEAAQNALELNGQELLQRAVRLDLARERGAYTPTSNNNWNNSFQKGGKGQSQTVFVKGFDRSLGEDEIKSSLQEHFGSCGEITRISVPKDYDSGSVKGFAYLDFSDGDSLNKALELHESELGGYTLSVDEAKPRGDNQGSGGRGAGGRSGGGRFGGGRSGGGRGQFGGRGGGGRGGRGRGGGRGRGTPNRPSLAAEGTGIYN 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi494g00021 742 CDD RRM2_NUCLs 593 671 IPR034350 -
Sebi494g00021 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 592 673 IPR000504 GO:0003723
Sebi494g00021 742 Coils Coil 25 63 - -
Sebi494g00021 742 MobiDBLite consensus disorder prediction 1 364 - -
Sebi494g00021 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 506 567 IPR000504 GO:0003723
Sebi494g00021 742 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 46 637 - -
Sebi494g00021 742 Gene3D - 589 705 IPR012677 -
Sebi494g00021 742 MobiDBLite consensus disorder prediction 458 474 - -
Sebi494g00021 742 SMART rrm1_1 593 669 IPR000504 GO:0003723
Sebi494g00021 742 SMART rrm1_1 501 563 IPR000504 GO:0003723
Sebi494g00021 742 MobiDBLite consensus disorder prediction 1 17 - -
Sebi494g00021 742 MobiDBLite consensus disorder prediction 479 498 - -
Sebi494g00021 742 FunFam Nucleolin 2 577 727 - -
Sebi494g00021 742 MobiDBLite consensus disorder prediction 26 84 - -
Sebi494g00021 742 Coils Coil 132 152 - -
Sebi494g00021 742 MobiDBLite consensus disorder prediction 432 448 - -
Sebi494g00021 742 MobiDBLite consensus disorder prediction 384 474 - -
Sebi494g00021 742 MobiDBLite consensus disorder prediction 665 742 - -
Sebi494g00021 742 SUPERFAMILY RNA-binding domain, RBD 584 703 IPR035979 GO:0003676
Sebi494g00021 742 MobiDBLite consensus disorder prediction 228 242 - -
Sebi494g00021 742 MobiDBLite consensus disorder prediction 170 202 - -
Sebi494g00021 742 SUPERFAMILY RNA-binding domain, RBD 490 585 IPR035979 GO:0003676
Sebi494g00021 742 MobiDBLite consensus disorder prediction 413 431 - -
Sebi494g00021 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 594 666 IPR000504 GO:0003723
Sebi494g00021 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 560 IPR000504 GO:0003723
Sebi494g00021 742 MobiDBLite consensus disorder prediction 123 169 - -
Sebi494g00021 742 Gene3D - 440 588 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi494g00021 Sebi-Chr494 493639 498742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi494g00021 507 655 Eukaryotic Initiation Factors Gene Family AT4G34110 32.667 2.08e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi494g00021 K11294 - gmx:100779929 494.582