Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi494g00018 ATGGCTATGGTTTCCGTCGGTTTCCATAAGGTGGCAAACCTGTGTGGGAGAAGGGAGAGTTGGAGGTTGCGTCTGAAACTAATTAGGCTTTGGAAGATGTCTGCAGTGGCCACCCCAGATGATCCCTTCGCCCTGCATATGTTATTTGTGGATCAGGAGGGTCTCTGCATCGAGGCTGTTATCCAGAAACACTTGATGCACCGATTCAGTAATTCCGTCATAGAAGGGGAGGTTTATAATGTTAGTAATTTCTCTGTTACTCGGAACAGTGGGAAATTCAGAGCAACACACCATGACTACAAGCTTACCTTTAATGCAAACACAAGGATTGTTCTCTGTCCTGTCGTCACTATTCCGGACCATGGTCTGACTCTGGTCAAGACATCTGATATCATGAAGACTAAAGGGTCTTCTCTGTACCTAATCGATTTCATGGGAATAGTTACGGGTATCTCCGAAGAGTTAAACTTAAGCAAGGAAGGGAGACAAACACGCTTGATGCTGATCGATATGGTTGACGAAATGTTGGGGAAGATCAGATGTGCTATATTTGGACAGCTCATTGATGTTGTTAAGGGGTATCTAACTCTTCCACGGTGTGGTTTGCCTGTTCTCATTATTCAGCTTGCCCGTGTTAATCTATACAGGGGGGAAGTTGGCATTCAAAACCTTTTGAATGCGTCCAAGCTGTTGTGGAATCCTGAAATTCCGGAGGCCGTGGAGTTCAAAAATGGGCTTGCTGTTCATGAGATTGAAACGGACGTTGCAATCTCCCTGATATCAGATAATAGTCGTCCTATTTCTATACGGGAGCAATTCCTTGAACTGAACCCCAGGAAGCGTTTGGGGGAGCTGAACAACCTTCTGGAGGATGGAACTTGTATAGTCCATGGCACAATAACAGAGGTATTCCAGGAAGACGATTGGTGGTACATTGCATGCTCTTGCATGAGGGCTGTTGATTTCAGTCAAGGGTTCCCATTTTGCGATCGTTGCAAGCGTGAGGTGTATGACATGTCACCAAGGTACAAGATAAAGGTTCTTGTGTGTGATGAATCTGAATCAACTGAGTTGATTATGTTTGATGCGGAGTGTTATTCGCTAATTAACATACCTTGTAAGGGGCTCCTCTCGGATTCTAAGGGTAAGCAGTGTGACGGTTATCCAAATGAAATATTAGATTTTGTTGGTCAAGAGCTGCTTTTCCGAGTTGAGCTCAATGCAGATAAATCTTCCAGCTTCGACGACGAGTCCATTAAAGTTCGGAAGATCTGTTTCGAACCATGCATTATCAAAGAATATAAGGGACTGATTGATGATGAGACCCCTTTGAAGCTCAATGAACTTGAACTAACTCCACCATGTTTTGGCCATTCCTCATCCACTCCCTCTGCTTCCAACCTCAAGTGCAAACCTCCTTCTGAGGGGAAAGATCATGAACCTTGTGAAAAGAGGAAGAGGGGCAAGGCAAAACTTATTAAAGTGGAAAAATCTTGA 1497 0.4422 MAMVSVGFHKVANLCGRRESWRLRLKLIRLWKMSAVATPDDPFALHMLFVDQEGLCIEAVIQKHLMHRFSNSVIEGEVYNVSNFSVTRNSGKFRATHHDYKLTFNANTRIVLCPVVTIPDHGLTLVKTSDIMKTKGSSLYLIDFMGIVTGISEELNLSKEGRQTRLMLIDMVDEMLGKIRCAIFGQLIDVVKGYLTLPRCGLPVLIIQLARVNLYRGEVGIQNLLNASKLLWNPEIPEAVEFKNGLAVHEIETDVAISLISDNSRPISIREQFLELNPRKRLGELNNLLEDGTCIVHGTITEVFQEDDWWYIACSCMRAVDFSQGFPFCDRCKREVYDMSPRYKIKVLVCDESESTELIMFDAECYSLINIPCKGLLSDSKGKQCDGYPNEILDFVGQELLFRVELNADKSSSFDDESIKVRKICFEPCIIKEYKGLIDDETPLKLNELELTPPCFGHSSSTPSASNLKCKPPSEGKDHEPCEKRKRGKAKLIKVEKS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi494g00018 498 Gene3D - 271 436 IPR012340 -
Sebi494g00018 498 MobiDBLite consensus disorder prediction 457 498 - -
Sebi494g00018 498 Gene3D - 8 114 IPR012340 -
Sebi494g00018 498 SUPERFAMILY Nucleic acid-binding proteins 290 425 IPR012340 -
Sebi494g00018 498 Pfam Domain of unknown function DUF223 47 120 IPR003871 -
Sebi494g00018 498 SUPERFAMILY Nucleic acid-binding proteins 125 247 IPR012340 -
Sebi494g00018 498 MobiDBLite consensus disorder prediction 472 498 - -
Sebi494g00018 498 SUPERFAMILY Nucleic acid-binding proteins 7 114 IPR012340 -
Sebi494g00018 498 CDD RPA1_DBD_A_like 22 110 - -
Sebi494g00018 498 Gene3D - 117 253 IPR012340 -
Sebi494g00018 498 Pfam Replication factor-A C terminal domain 296 416 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi494g00018 Sebi-Chr494 471384 473914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi494g00018 1 425 Core DNA Replication Machinery Family AT5G08020 21.267 3.31e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi494g00018 - - lja:Lj6g3v0884310.1 337.035