Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi494g00017 ATGTACTTTAAGAGAATACAGTGCAGAGATCGTAGATGGGCTTTATTATTGCAGCCATCCAAATACTTCTACAGGCCAAGATTCTCTGATCATCCATGCTCTCATTCTTTGTCCCCTGAGACCACTGTGAAAGAATATGCTTCACATGGCAGTATCATCAGAAGGCATTTTTTAGGTTCAGATTCATCTAGGCATGCTTTATCTAGAAATAGTTATACTGGTCTAGACAAAAGGTGTAGTTTAGGTCTTAAGAGTACTCAGTTACAAGCGTATAGTTCTGAAAGTGATGGAAGAAATGCGAGTGAGAATAAACATGTACATGTTAATGATGGGGCTAACTTTGACAAGGGGAAGAATCAACAAGAGAAGTCTCGGGAAGATGCTAAGCACTGTAATGTCCATACACGACTTGGAGAACAGGATCAAGAGGAGTGGCTTAATAATGAGAAGCTTGCCATAGAAAGTAAAAGGAGAGAATCACCTTTTTTGACAAGAAAGGATAAGTTTAAAAACGAGTTTTTGAGAAGAATTGTTCCTTGGGAGAAAATAAACATTTCCTGGGATACATTTCCTTATCACATTCATGAGCATACCAAAAATCTTCTGATGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTTGCTTCATCTTTTGGGACTCGCCTCACATCTTCAAGTGGAAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTCTATCGTGAAAGATTAGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTTTATTGGTGCTTGATAGCAACATCCTTGCTCCTTATGATATTGATGATGATTTATCGTCAGACTACGAATCTGATGATGATAATGTAGAATCTGGGGAGGACGGTTCTCTGGAGTCAGAGAATGAAGACGATAATGATGCTAGTAATGAAGAGGAGTGGACTAGCAGTGCTGATGCGAAGTCCGATGCAAGTGATAACGAAGACGCACTAGCATCTGCTGAAGCAGCCCTTAAGAAGGTTAAAGCAGCTGTTCAGAAACTTGTCCCTTACAATGTTGAAGAATTTGAGAAGATAACATCTGGAGAATCTGAGAGTTCTGAGTCCTCCAAGTCTAATGATGCCAAGTCTTCTGATAAATCTGGATGTCAGCTAAGAAAAGGTGACCGTGTGAAGTACATTGGGCCATCTGTTCAAGTTAAAGCTGATGATAGGATCATACTGGGGAAGATAATGACATCTGATGGTCCAACTAATGCTTATACTATTATACATGGCAGGCCTTTAACTAATGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATCTAGTTGCTGTCCTCTTGGATAACAATGAAGATAGGGCCAATGAGGTGGAGAACCTTAATAACAATCAAACAGAACCACCAATTTATTGGATACATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATAGCAGTGGAGGCTTTATGTGAGGTTTTGCATTCCAAACAACCTCTTATTGTCTATTTTCCTGACAGTTCACAGTGGTTGCATAGAGCAGTTCCTAAGTCAAACCGAAGTGAGTTTTTTAATAAGGTTGAAGAGATGTTTGACAAGTTATCTGGCCCCATAGTTTTGATTTGTGGTCAAAACAAAGTTCAGTCAGGATCAAAGGAGAAAGAACAATTTACGATGATACTTCCGAACTTTGGACGTGTTGCTAAGCTGCCTCTCTCTCTGAAGCGTTTGACTGAGGGATATAAAGGGGGAAAGACATCAGAAGATGACGAAATTAACAAGCTTTTCTCTAATGTTTTGTCTATACAACCACCTAAGGATGAGAATGTACTGGGAACATTCAAGAAACAACTTGAGGATGACAGGAAAATTGTGATTTCACGTAGTAATTTGAATGAACTACGGAAGGTTCTTGAAGAACATCAGCTCTCATGCATGGACCTCTTGCACGTTAATACTGATGGCATCATTTTGACAAAGCAAAAAGCTGAAAAAGTGGTAGGCTGGGCAAAAATCATTACTTGTCATCATGCCTGCTTCCTTCTATTAAAGGAGAAAGATTGTGCCTGCCTCGTGAAAGGTATAAAAAACCTCGCAAAGGATGAGTTTGAGAGCAATTTCATTTCAGCTGTAGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAAGATGTAAAGAAGGCACTTAATGAACTTGTTATTCTTCCAATGAGAAGGCCTGAGCTTTTCTCTCATGGAAACCTGTTGCGGCCCTGCAAAGGAATATTACTTTTTGGTCCTCCTGGAACTGGGAAAACCCTTCTGGCTAAGGCACTTGCAACAGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACTCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTTGAACATGAGGCCACCAGAAGAATGAGGAATGAGTTCATGGCAGCGTGGGATGGATTAAGGTCGAAAGAAAACCAAAGAATCCTCATTCTTGGTGCAACAAACCGGCCATTCGACCTTGACGATGCTGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCTGATGCTGAAAATCGGATGAAGATTTTAAGAATATTTCTTGCAAAAGAAAATTTGGATCCTGATTTTCAGTTTGATAAACTGGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGAGGAAGAAAAGAAGGGAGGCAATGACGGTACTTCGGTATTAAGGCCTCTTAAGTTGGATGATTTTATTCAGTCAAAATCCAAGGTGGGTCCATCAGTTGCCTATGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAATGAAATGTACGGAGAAGGCGGTAGGTAG 3015 0.4043 MYFKRIQCRDRRWALLLQPSKYFYRPRFSDHPCSHSLSPETTVKEYASHGSIIRRHFLGSDSSRHALSRNSYTGLDKRCSLGLKSTQLQAYSSESDGRNASENKHVHVNDGANFDKGKNQQEKSREDAKHCNVHTRLGEQDQEEWLNNEKLAIESKRRESPFLTRKDKFKNEFLRRIVPWEKINISWDTFPYHIHEHTKNLLMECAASHLRHNKFASSFGTRLTSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDSNILAPYDIDDDLSSDYESDDDNVESGEDGSLESENEDDNDASNEEEWTSSADAKSDASDNEDALASAEAALKKVKAAVQKLVPYNVEEFEKITSGESESSESSKSNDAKSSDKSGCQLRKGDRVKYIGPSVQVKADDRIILGKIMTSDGPTNAYTIIHGRPLTNGQRGEVYEVNGDLVAVLLDNNEDRANEVENLNNNQTEPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLHSKQPLIVYFPDSSQWLHRAVPKSNRSEFFNKVEEMFDKLSGPIVLICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRLTEGYKGGKTSEDDEINKLFSNVLSIQPPKDENVLGTFKKQLEDDRKIVISRSNLNELRKVLEEHQLSCMDLLHVNTDGIILTKQKAEKVVGWAKIITCHHACFLLLKEKDCACLVKGIKNLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAKENLDPDFQFDKLANLTDGYSGSDLKNLCIAAAYRPVQELLEEEKKGGNDGTSVLRPLKLDDFIQSKSKVGPSVAYDATSMNELRKWNEMYGEGGR 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi494g00017 1004 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 168 1003 - -
Sebi494g00017 1004 MobiDBLite consensus disorder prediction 273 323 - -
Sebi494g00017 1004 MobiDBLite consensus disorder prediction 90 129 - -
Sebi494g00017 1004 Pfam ATPase family associated with various cellular activities (AAA) 762 892 IPR003959 GO:0005524|GO:0016887
Sebi494g00017 1004 ProSitePatterns AAA-protein family signature. 865 884 IPR003960 GO:0005524|GO:0016887
Sebi494g00017 1004 MobiDBLite consensus disorder prediction 98 129 - -
Sebi494g00017 1004 MobiDBLite consensus disorder prediction 309 323 - -
Sebi494g00017 1004 Pfam AAA+ lid domain 915 950 IPR041569 -
Sebi494g00017 1004 Gene3D - 721 996 IPR027417 -
Sebi494g00017 1004 MobiDBLite consensus disorder prediction 273 307 - -
Sebi494g00017 1004 MobiDBLite consensus disorder prediction 354 378 - -
Sebi494g00017 1004 SMART AAA_5 758 895 IPR003593 GO:0016887
Sebi494g00017 1004 Coils Coil 440 460 - -
Sebi494g00017 1004 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 720 896 - -
Sebi494g00017 1004 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 720 942 IPR027417 -
Sebi494g00017 1004 Gene3D - 894 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi494g00017 Sebi-Chr494 356080 386471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi494g00017 756 957 Calmodulin-binding Proteins AT3G56690 35.577 1.09e-31 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi494g00017 - - gmx:100802939 1573.53