Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi494g00016 ATGTCGCGCCAGACGACGTCGTCTGCCTTCACCAAATCGAAGACCCTCGACAACAAATATATGCTGGGAGATGAGATTGGGAAAGGAGCATATGGTCGAGTTTACAAAGGTTTGGACCTGGAGAATGGAGATTTTGTTGCAATTAAACAAGTTTCTTTGGAGAATATTGCTCAGGAGGATCTCAACATCATCATGCAAGAAATTGATTTGTTAAAGAATTTGAATCACAAAAACATTGTAAAGTATCTTGGATCTTTAAAGACAAAGAGCCACCTGCACATAATTCTTGAGTACGTGGAGAATGGCTCGCTTGCAAATATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCGGTTTATATTGCCCAGGTGTTGGAAGGCTTGGTTTATCTACACGAGCAAGGTGTTATCCATCGGGATATTAAGGGTGCAAACATATTGACAACTAAAGAAGGTCTTGTCAAACTTGCTGATTTTGGTGTTGCAACAAAATTAACAGAGGCCGATGTTAACACTCATTCAGTTGTTGGAACACCATACTGGATGGCCCCAGAGGTTATAGAAATGTCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGTTGTACGGTTATTGAACTTCTTACATGTGTGCCTCCTTATTATGATTTACAGCCTATGCCAGCTCTTTTCCGTATTGTCCAGGATGAGCATCCTCCTATTCCTGATAGCCTTTCACCTGACATTACTGATTTTCTGCATCAATGCTTTAAGAAGGATGCTAGACAAAGGCCTGATGCTAAAACGCTGCTGTCTCACCCATGGATTCAAAACTGTAGACGTGCCCTGCAGTCTTCACTTCGTCATAGTGGAACATTAAGAAATATAGAGGAAGATGGTTCTGCAGATGCTGAAGTTTCTGGTGGTGAACATAAGAGCATTGGTGCAAGCTCTTCTATGGAGAAAGAGGGCTCTGCAAAAGAGTTTTCAACTGTAGCTGCTGATAGCAGCAAATCTCATGAAGACAATGCTTCAGATTCTAATGCTCCCAATGAAAGAACAGAGAAAGCAGATGATGTTCCATCAGATCAGGTTCTCACCTTAGCCATTCGTGAGAAGTCATTTCTACAAACTGGTTCTAGCAAACTTTCTTCTAATAGAGAAATGGATAGTTCTGAGCCAACTGGCAATCATGAAATTTCAAATGCAAAAGACCTTCATGAAGTCATGATGAATGGAGAAGTTGGATCTCCACAATCAAGAGGAATGGCTAGTAAGGTTGTAGGAAAAGACAGTTCTATCAATAATGGCAATAAATCATTTGCTTTTGGCCCAAGAGGTCAAGATAATGGTTCCCTAAAGATAAACAACCTGGGGAAGTTGTCGCTGAGGCATCCACATCTACATCCACTTCACATACGGCTAAAGGCAAACAATGGTGGGAACCTTTTACACCGGGTGATGATAGGTGTTCTAAAAGATGACGTGATTGATATAGATGGTTTGGTCTTTGATGAAAAACTTCCTGGAGAAAATCTTTTCCTCTGCAGGCCGCTGAGTTCAGGCAAATTAGGTTGGTTCATTAAAACCAGAGGATCAGAAGATGTGCAGAGGAAGTGTAGTGATGAACAGGTTGTGGAACATATGGTGAAACAGCAGGAGAGGTTATTCCAGGTGTTTAAGCTTCAGCAGTCAACACCTAGAAATGATTTCTGTCGGATAGCTGCAAAAAATGGAATACTTCTTAGGCTTATAAATACTCTTTATAGCTTAAATGAGTCAACTCGATTAGCTTCTATGTCTGTTGGGGGTGGAATTTTGGTTGATGGTTCAGCTCAACGGCCTCGTTCTGGTATATTGGATCCCACGCACCCTTTTATGAATCAGAACGAGGCAGTAGATCAGCAAGATCTCTCTAAAGTGAGGCGTGGAGTACTCGATCATCACTCAGAAACTTCACATGCTTCATCCTCCAATCCTCGAAGATCTGATGCTAACTACCCCATGGATGTTGATAGGCCTCAATCAAGCAATGCAGCAGCTGAAGTTATGTCACTAGAGAAGAGTTCAAATCTAGCATCCAGGGAATCTTCAGCTGGTGCATTGAAAGAGCGAGAGAGAATATGGATCGTTGGAAAACTGATCCTTCTCGAGCTGATGTTGAACCCAGACAGCAGCGTATCAGTATTTCTGCTAACAGGACATCAACGGATAGGCCTCCAAAATCAACAGAACCTTCATCGAATGGTTTATCAGTTACAGCTATACAGCAAGAGCAAACATGAAAGTGTACTCCCTTTGTTACATGCCTCTGAAAAGAAAACAAATGGTGAACTAGACTTTTTGATGGCAGAATTTGCAGATGTTTCTCAACGTGGAAAGGAAAATGGAAATCTTGACTCCAGTGCTAGAGTGTCTCACAAAGTCACTCCCAAGAAATTAGGGACTTTTGGTTCTAGTGAAGGAGCTGCTTCCACATCTGGGATTGTATCTCAGACAGCATCAGGTGTACTGTCTGGTTCAGGTGTTCTGAATGCTAGACCAGGTAGTGCTACTTCGTCTGGGCTACTTTCCCACATGGTTTCATCATTGAATGCAGAGGTTGCAAGAGAATACCTTGAAAAAGTCGCAGATCTTCTGCTTGAGTTTGCACAAGCTGACACAACAGTGAAGTCTTACATGTGTAGCCAAAGCTTGCTCAGTCGTCTTTTCCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATTATCTGTCAACGGATCCAAATTGCTTAGAAAATCTTCAGCGTGCTGAAGCCATCAAATACTTGATACCAAATCTTGAACTCAAAGAAGGGTCTCTTGTATCAGAGATACACCATGAGGTCCTGAATGCACTGTTCAATTTATGCAAGATAAATAAGAGGAGACAAGAACAAGCAGCTGAAAATGGAATCATTCCCCATTTGATGCAATTTATCACATCAAATTCTCTCCTGAAACAATATGCATTGCCTCTGCTATGTGACATGGCTCATGCATCTCGCAACTCAAGGGAGCAGTTAAGAGCTCATGGTGGTTTGGACGTATATTTGAACCTTCTTGAGGATGAGCTTTGGTCTGTGACTGCACTAGATTCAATTGCAGTTTGCCTGGCCCATGACAATGACAATAGGAAGGTTGAACAAGCATTGTTGAAAAAGGATGCGGTTCAGAAGCTTGTGAAGTTCTTCCAGTGCTGTCCAGAGCAGCATTTTGTACACATATTGGAGCCATTCTTGAAAATCATCACAAAATCTGCCCGGATCAATACTACATTGGCTGTTAATGGATTAACACCATTGCTAATTGCAAGGCTTGATCATCAGGATGCTATAGCTCGTCTTAATTTACTCAGGCTAATAAAGGCTGTTTATGAGCATCACCCTCATCCCAAGAAGCTGATTGTGGAGAATGATCTACCTGAGAAACTTCAAAACTTGATAGGGGAACGGAGAGATGGACAGGTGTTGGTCAAACAGATGGCTACTTCATTACTTAAAGCTCTACACATAAACACCGTTTTGTAA 3564 0.4169 MSRQTTSSAFTKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTKSHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLHQCFKKDARQRPDAKTLLSHPWIQNCRRALQSSLRHSGTLRNIEEDGSADAEVSGGEHKSIGASSSMEKEGSAKEFSTVAADSSKSHEDNASDSNAPNERTEKADDVPSDQVLTLAIREKSFLQTGSSKLSSNREMDSSEPTGNHEISNAKDLHEVMMNGEVGSPQSRGMASKVVGKDSSINNGNKSFAFGPRGQDNGSLKINNLGKLSLRHPHLHPLHIRLKANNGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFLCRPLSSGKLGWFIKTRGSEDVQRKCSDEQVVEHMVKQQERLFQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASMSVGGGILVDGSAQRPRSGILDPTHPFMNQNEAVDQQDLSKVRRGVLDHHSETSHASSSNPRRSDANYPMDVDRPQSSNAAAEVMSLEKSSNLASRESSAGALKERERIWIVGKLILLELMLNPDSSVSVFLLTGHQRIGLQNQQNLHRMVYQLQLYSKSKHESVLPLLHASEKKTNGELDFLMAEFADVSQRGKENGNLDSSARVSHKVTPKKLGTFGSSEGAASTSGIVSQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNAEVAREYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINYLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSLLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSARINTTLAVNGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPHPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi494g00016 1187 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi494g00016 1187 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Sebi494g00016 1187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Sebi494g00016 1187 MobiDBLite consensus disorder prediction 375 397 - -
Sebi494g00016 1187 MobiDBLite consensus disorder prediction 296 360 - -
Sebi494g00016 1187 MobiDBLite consensus disorder prediction 375 403 - -
Sebi494g00016 1187 CDD STKc_Cdc7_like 19 274 - -
Sebi494g00016 1187 FunFam MAP3K epsilon protein kinase 1 17 306 - -
Sebi494g00016 1187 MobiDBLite consensus disorder prediction 310 336 - -
Sebi494g00016 1187 MobiDBLite consensus disorder prediction 649 695 - -
Sebi494g00016 1187 SUPERFAMILY Protein kinase-like (PK-like) 10 284 IPR011009 -
Sebi494g00016 1187 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi494g00016 1187 SUPERFAMILY ARM repeat 854 1180 IPR016024 -
Sebi494g00016 1187 Gene3D - 842 1184 IPR011989 -
Sebi494g00016 1187 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 15 287 - -
Sebi494g00016 1187 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672|GO:0006468
Sebi494g00016 1187 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672|GO:0006468
Sebi494g00016 1187 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Sebi494g00016 1187 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Sebi494g00016 1187 Pfam Protein kinase domain 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi494g00016 1187 MobiDBLite consensus disorder prediction 642 695 - -
Sebi494g00016 1187 Gene3D Transferase(Phosphotransferase) domain 1 17 306 - -
Sebi494g00016 1187 MobiDBLite consensus disorder prediction 337 358 - -
Sebi494g00016 1187 FunFam MAP3K epsilon protein kinase 1-like 841 1182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi494g00016 Sebi-Chr494 324949 354082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi494g00016 1 590 MAP Kinase Kinase Kinase AT3G13530 57.164 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Sebi494g00016 Pkinase 5.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi494g00016 - - egt:105959977 1413.28