Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi491g00035 | GTATTCCTGATATCAACTCGTGCTGGGGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGGTTTGGACAGAAGCGGCATGTTTTGGTGTTCCGTCTTCTAGCAGCTGGTTCACTTGAAGAATTAGTTTATTCTCGTCAGGTTTACAAGCAGCAACTCTCAAACATTGCTGTCTCTGGGAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAGCTTTTTGGAATTTCCAATTTATTTCGAGATTTATCTGATAAGCTATTTACCAGTGAGATCATTGAATTGCATGAGGCAAATAAAGAACAGGGGCATAAAACAGAACAAGAGAAAATAAATCTGTCAGAAGAAACAGATTCATTAGCATCAGAGTCTGTAACCAGGTTATGTACTGAATCTGCAAGCGCTGCAACAAGTAAACCAGATCTTGCATTTGAAGACCTTGGCATTGTCTATGCTCATCGCAATGAAGACATTGTCAACTTCGGACCAGGGATTCAAGGGAAAATTCATACCAGCAGCCCTTCAGGTGATAGCCTGAGCGAGCCAAGCATCTCTTTAGTCCACCAAAGAAAGAAACCAGATTGTGTACCTAAGAAACAGAAAGTTCCTTTGATTGATGAAAAGAAGAGAACCCAATATAGCCTCCTTGCCCAATCTATGGGCATGGGAGAGCTTGCATTTAGCAAATGGTTACTAGCAGCTACTCCACTGGAGAGAGAAAAAGTACTTGTAGACTACAAGAAGAAAAAGAAAATACCTAATGGTTGA | 852 | 0.4178 | VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVLVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHEANKEQGHKTEQEKINLSEETDSLASESVTRLCTESASAATSKPDLAFEDLGIVYAHRNEDIVNFGPGIQGKIHTSSPSGDSLSEPSISLVHQRKKPDCVPKKQKVPLIDEKKRTQYSLLAQSMGMGELAFSKWLLAATPLEREKVLVDYKKKKKIPNG | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi491g00035 | 283 | PANTHER | SNF2/RAD54 FAMILY MEMBER | 1 | 219 | - | - | |
| Sebi491g00035 | 283 | Pfam | Helicase conserved C-terminal domain | 2 | 44 | IPR001650 | - | |
| Sebi491g00035 | 283 | CDD | SF2_C_SNF | 1 | 55 | - | - | |
| Sebi491g00035 | 283 | Gene3D | - | 1 | 166 | IPR027417 | - | |
| Sebi491g00035 | 283 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1 | 88 | IPR001650 | - | |
| Sebi491g00035 | 283 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 99 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi491g00035 | Sebi-Chr491 | 589552 | 590638 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi491g00035 | 1 | 85 | RAD5 or RAD16-like Gene Family | AT5G05130 | 45.882 | 2.70e-16 | 77.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi491g00035 | K20098 | - | gmx:100781003 | 450.284 |