LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi491g00017	ATGGGTTGCATATGTTCCAAGAGTTCAGCTGTAGAAGACAGCAAAGAGGATATCACAAAGAAATTGCAATCATGTAGCACAAGGCCTTCAGAGTTGAATGTTTTGAGATTGAATTCCAGCAAGAGGGTTGAGGGGGGTCGGGTGAAAGATACGCCATTAGGTCGAGGTGATGTGAAAGCTTCATTGATTGTTGACAAGAAAGTCAATGACTCAGTGCAATTGTATGTTGATCCAAATGGGAAGAAGAAAATAGAGAAGCCTGAATTGACTGTTATTGATCATCCTGGCCTTGGAAGGGTTCCAAAGGCTGCAGAAGGAGAGCAAGTTGCAGCAGGATGGCCGGCTTGGCTTTCTTCTGTTGCTGGGGAAGCTATCAAGGGATGTATACCACGGAGTGCAAATTCTTTTGAGAGGTCACATAAAATTGGCCAAGGAACTTATAGTACTGTTTATAAGGCACGTGATGTGACTAATCAAAAGATTGTTGCATTGAAGAGGGTGCGCTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTCCTGCGTAGACTCAACCATCCAAATATAATAAAGTTGGAGGGCTTGATAACTTCAGAGACGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGACTTGTATCGAATCCTAGCATTAAGTTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCACCGCGACATAAAGGGCTCAAATCTTCTCATTGACAACAATGGTGTCTTAAAGATTGCTGATTTTGGTTTGGCAAGTTTTTTTGATCCCAGTCATAGTATTCCATTGACAAGCCGTGTTGTAACTCTGTGGTATAGACCACCTGAACTTCTACTCGGAGCAAATCATTATGGGGTTGCAGTGGATTTATGGAGCTCTGGTTGCATACTGGGGGAACTATATACTGGGAGGCCAATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCGCCATCTGAGGACTATTGGCTTAAATTGCGATTGCCACATTCAACAGTATTCAAGCCTCCACACCATTATAGGCGATGTGTTGCTGAAACATTTAAGGAATACCCTTCTACTGCTATTAAGCTTATAGAGACCCTACTTTCAGTAGATCCAGCACATCGAGGGACAGCTGCTGCTGCTCTGAAAAGCGAGTTCTTTACATCGGAACCTCTGCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCCAGCAAGGAGATTGATGCTAAATTGCGGGATGAAGCAACCAGAAGGCAAGGAGCTGTGGGAGGCAGGGAGCAAAAAGTTGGCTCAGGAGTTAGGCAAGAAAAAGGACATAGGGCCTATGCCACAGCAAAAGACAATGCTGACCCAGGCATATCAATGCAGCAAGCGCAACGTTATTCCAGCTCAAAGAATCGGAGTGAATTGTTCTACACTCACAGAGAACCTGTGTCTGGGCACAAACAGTCTGAAGATGTTAAAGAAATGGACAATTATTTCTCTGGGCATCTTTATAAGAAGCCTTCACATTCAGGCCCATTGGTTCCTGGTTCTGGCTGGGCAAGGGCTGGGAAGGAAGTTGATGATGGACCTCCTGTTTCAAACAGAGTGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGGACTTTGTTGTCTGAAGACCAGGAGGAAAAACCAGTTCACTTGCACCACAGAAAACCAATTGAAGTAAGAAAATCCGGGGAGGCAACTAATGGATCAGAGTCAAGAAGAAGGCAGGATCAAAAACGGATGGTTGATCTCGGTCAAATGGAAAATAGAAGGGTCCCCACTGAAAAGTCAACTCCGGATGGGCATGGGTCCAGGGGAAACAAGATATACCTCTCTGGTCCTTTACTGGTTCAATCAAGCAACATGGATCAGATGCTCAAAGAGCATGATCGAAAGATCCAGGAGTTTTCAAGACGAGCAAGAATTGACAAGTCCAGAGCAAGAGGTGAGAAAGTCCGTGCACAGAGAAAGTAG	2091	0.4424	MGCICSKSSAVEDSKEDITKKLQSCSTRPSELNVLRLNSSKRVEGGRVKDTPLGRGDVKASLIVDKKVNDSVQLYVDPNGKKKIEKPELTVIDHPGLGRVPKAAEGEQVAAGWPAWLSSVAGEAIKGCIPRSANSFERSHKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREIHVLRRLNHPNIIKLEGLITSETSRSLYLVFEYMEHDLTGLVSNPSIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPSHSIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSSGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCVAETFKEYPSTAIKLIETLLSVDPAHRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKLRDEATRRQGAVGGREQKVGSGVRQEKGHRAYATAKDNADPGISMQQAQRYSSSKNRSELFYTHREPVSGHKQSEDVKEMDNYFSGHLYKKPSHSGPLVPGSGWARAGKEVDDGPPVSNRVNLSKLSGLVASRTLLSEDQEEKPVHLHHRKPIEVRKSGEATNGSESRRRQDQKRMVDLGQMENRRVPTEKSTPDGHGSRGNKIYLSGPLLVQSSNMDQMLKEHDRKIQEFSRRARIDKSRARGEKVRAQRK	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi491g00017	696	Gene3D	Phosphorylase Kinase; domain 1	124	218	-	-
	Sebi491g00017	696	FunFam	probable serine/threonine-protein kinase At1g54610	219	460	-	-
	Sebi491g00017	696	Pfam	Protein kinase domain	136	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi491g00017	696	ProSiteProfiles	Protein kinase domain profile.	136	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi491g00017	696	ProSitePatterns	Protein kinases ATP-binding region signature.	142	165	IPR017441	GO:0005524
	Sebi491g00017	696	FunFam	probable serine/threonine-protein kinase At1g54610	123	218	-	-
	Sebi491g00017	696	SMART	serkin_6	136	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi491g00017	696	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	256	268	IPR008271	GO:0004672\|GO:0006468
	Sebi491g00017	696	Coils	Coil	683	696	-	-
	Sebi491g00017	696	MobiDBLite	consensus disorder prediction	579	655	-	-
	Sebi491g00017	696	CDD	STKc_CDK9_like	136	420	-	-
	Sebi491g00017	696	MobiDBLite	consensus disorder prediction	580	641	-	-
	Sebi491g00017	696	MobiDBLite	consensus disorder prediction	672	689	-	-
	Sebi491g00017	696	PANTHER	CELL DIVISION PROTEIN KINASE	134	426	-	-
	Sebi491g00017	696	Gene3D	Transferase(Phosphotransferase) domain 1	219	457	-	-
	Sebi491g00017	696	SUPERFAMILY	Protein kinase-like (PK-like)	131	428	IPR011009	-
	Sebi491g00017	696	MobiDBLite	consensus disorder prediction	672	696	-	-
	Sebi491g00017	696	MobiDBLite	consensus disorder prediction	451	473	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi491g00017	Sebi-Chr491	258119	263635	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi491g00017	131	463	Core Cell Cycle Gene Families	AT5G10270	48.711	3.40e-110	341

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Sebi491g00017		Pkinase	2.1e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi491g00017	-		-	gmx:100807590	1148.65