Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi48g00088 ATGGCAACTTTGCTGGGCAAGGAGCATGATTTGAACCTGAAGGAGACAGAGCTTTGCCTGGTGATGGCAATGAAGTGGAAACTCCAAGGGCCAACGGAAAGAGAGGATGTCTCAAAGGAAAATACCCTCCATAAGGATCCAGCAACAAAGCCACCATCTAAGGCACAGGTGGTTGGTTGGCCACCAGTGCGGTCATATAGGAAGAATATTATGTCACAAAAGGGTAATAGTGAAGATGGCACTGATCAGAAGACAACAAATAGCACTAATTCTGGGGCACTTGTCAAGGTTTCCATGGATGGTGCGCCTTACCTTCGCAAAGTGGACTTGAAAATCTACAAAAGCTACCAAGAATTATCCGATGCTCTGCTCAAAATGTTCAGATCCTTCACCATGGAAGGTAACTATGGGGACCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGGTGGATCTTCTAAACAGCTCTGAGTTTGTGCCAACCTATGAAGATAAGGATGGGGACTGGATGCTCGTCGGTGATGTTCCATGGGACGCCAAGAGCCATGGAAAAATGCAAAAGCAGAAGCTGAACTGGCCTTAA 585 0.4598 MATLLGKEHDLNLKETELCLVMAMKWKLQGPTEREDVSKENTLHKDPATKPPSKAQVVGWPPVRSYRKNIMSQKGNSEDGTDQKTTNSTNSGALVKVSMDGAPYLRKVDLKIYKSYQELSDALLKMFRSFTMEGNYGDQGMIDFMNESKLVDLLNSSEFVPTYEDKDGDWMLVGDVPWDAKSHGKMQKQKLNWP 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi48g00088 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 179 IPR003311 GO:0005634|GO:0006355
Sebi48g00088 194 Pfam AUX/IAA family 35 179 IPR033389 -
Sebi48g00088 194 ProSiteProfiles PB1 domain profile. 92 194 IPR000270 GO:0005515
Sebi48g00088 194 SUPERFAMILY CAD & PB1 domains 87 180 - -
Sebi48g00088 194 MobiDBLite consensus disorder prediction 71 90 - -
Sebi48g00088 194 MobiDBLite consensus disorder prediction 30 47 - -
Sebi48g00088 194 MobiDBLite consensus disorder prediction 30 58 - -
Sebi48g00088 194 Gene3D - 86 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi48g00088 Sebi-Chr48 2404990 2407169 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi48g00088 68 194 B3 DNA Binding Superfamily AT2G46530 30.435 3.95e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi48g00088 AUX_IAA 9.2e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi48g00088 K14484 - gmx:100810762 236.498