Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi48g00081 ATGGAAAAGACAGTGGCATATGAGAATGATCTCAACCTCAAGGCAACAGAACTTAGATTGGGGTTGCCAGGGACTGAGGAAAAGGAGGAGAAAGCCATGGCTGGTGTGAAAAGCAACAAAAGGCAATTGCCTGAAACTTCTGAAGAGTCTGTTTCCATTTCCAAGGCCTCACATGACCAACAAGTTGAGAGTGATGCAGCCCCTCCTGCCAAGGCAAAGATAGTGGGATGGCCACCAATCAGATCCTACAGGAAAAACAGCTTGCAAGAAGCTGAGGGTTCTGGGATCTATGTGAAAGTGAGCATGGATGGTGCTCCTTACCTCAGGAAGATTGACTTGAAGGTCTATAGGGGCTATCCAGAACTACTCAAAGCTCTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGCACAGAAGCTAGAGGATTGGGTTGTGGTGTATGA 579 0.456 MEKTVAYENDLNLKATELRLGLPGTEEKEEKAMAGVKSNKRQLPETSEESVSISKASHDQQVESDAAPPAKAKIVGWPPIRSYRKNSLQEAEGSGIYVKVSMDGAPYLRKIDLKVYRGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKGTEARGLGCGV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi48g00081 192 MobiDBLite consensus disorder prediction 45 61 - -
Sebi48g00081 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 186 IPR003311 GO:0005634|GO:0006355
Sebi48g00081 192 SUPERFAMILY CAD & PB1 domains 85 181 - -
Sebi48g00081 192 MobiDBLite consensus disorder prediction 22 69 - -
Sebi48g00081 192 Gene3D - 89 192 - -
Sebi48g00081 192 ProSiteProfiles PB1 domain profile. 95 182 IPR000270 GO:0005515
Sebi48g00081 192 FunFam Auxin-responsive protein 90 192 - -
Sebi48g00081 192 MobiDBLite consensus disorder prediction 22 36 - -
Sebi48g00081 192 Pfam AUX/IAA family 40 189 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi48g00081 Sebi-Chr48 2251221 2252137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi48g00081 23 188 B3 DNA Binding Superfamily AT2G46530 27.684 1.78e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi48g00081 AUX_IAA 3.7e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi48g00081 K14484 - gmx:100800212 336.265