Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi48g00069 ATGGTTGGATTGGAACTCATACCTGTGGGTACAATTTTGGCTGTTCTAACTAGCCAGGTGGTGAGAACAGCTAATGCAGCAATGGATGTTCTTGTTGATAAAGAAAGTTTCAAGGTCCTTTCAAAACACCTGCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCTCAAGCTGCAAGGGTTGCCCTGGAATACATAGTCAAGGAGGTTGAGCAAGTCACAAGGGATATTGGAAGGTCTCTGGCTGCACTGTCTATTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAACAGATTACAGAGTGAGATGCAAAGGGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTATTGACAAGCTGAACCATGGAATTAAGGAGCAGAAACTAGATCAGGCTTTTGCAAATGACATGCTTGAGGAAATAGCAATGGCAGTTGGGGTGCCAGTGGAACCTTCAGAGATAAGCAAAGAGCTTGCCAGCATTAGGTGGGAAAAAGAAGAAGCTGCCAACAGGAAAGAATTATCTGAATTTATTTTTCTGGAGCAGATCATTGAGCTACTCTCTCGAGCTGATGCTGCTAGAGATTATGAGGAAGTTAAGAAGCAATACTTTGAAAGGGTTCAGGTAATAGAGCGATATGGTTCAAAGGAAAATTATATTCCACCACTTAATTCTTTCCTTTGTTGCATAACTGGAGCTGTCATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCCATTGAAGCCTGGTTTGTTGATGGCAAGAGGACTGACCCTGAAACAGAAGAGGTTCTTGAAGATACTACCTTGAGGTCAAACATTCGATTAAGAGAATCTATTATAGAGTGGAGAGAACTTAATTACTGCTTTGAAATAAAGTCTGTCAGGGAAAACCTATCAACCAGTTCTAACGTATTATTGCAAGAATCCCTTAGCCAAATACAGGCTCTCATAAGAGAGAATTCTATTAACAAGGATTGGATTTCTATTGGAGGGCTTACTGATATTATTATCACTATCCTTGGGAACTCTGTCTCCAGAGATGTGAAGATGAAGATCTTGATTACTTTGAAGGATGCTGTAGAGGGACATGCAAGAAACAAGGAAAAAGTGGTTGAGTCTCAAGGGTGGGGTCACATTATTTCCTGCTTACAAAGTGACTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTGCTTCAAGACCGATCTGGCTGGAATAAAAGCTTCTGCAAAAAACTCTCTGAGCATCCCAGTGCAGTTCTTTACCTTGTTAGCCTTCTAAAGGATCCTGTCAGCATTTCAACTGGGATTGCAGAAAAGATTTTGATGGAGCTTATTGAAATAGATGAGGAAAATATTTGCAGTACCGCTAAGTTTGGCTGGTACAAACCTCTTGCTGATCGAATGATTCAAGGATTGGAGTCTTCAAGAATGTCAATGGCAAAAGTCATAGTTAATTTGGAATTGAAGGATTTAAACTTGAAACTCCTTGGTGAGCAAGGAGTTATACCTCCTTTGCTAGAAATGCTATCTAGCAGCATTGAATCAAAAGAATTGTCATTATCAGCCCTGGTTAAACTAGCAGGATTTCATGCCAATAAGGGGATTATTGCTGCATCTGGAGGCGTACCTCTTGTTCTAGATTTAATGTTCTCTCGCAGGACTCGGTCATTCATTACCATTAAATGTTGTGAAATCCTTGAGAAGCTTTCTTCTGATGATGATGGAATAGATTTCTTTGTTGATGGAGAAGGTAATCAACTCGAGTTAGATAGCATTATTACCAATTTGTTAGCTCTGCAGCAGAGTCCTAACTCAGCTCACAACTTCCGTAAGCCTGCATTACGCACTCTTCTTGGCATTTGCAAGTTTGAGACTGGTTTAGTTAAGAAGGCAGTTCTGGCAGCCAATGGTGTATCTCTAATCCTTCCCCTTCTTGATGATTCTGACTCAGAAATCAGGGAGATTGCCATAAATCTTCTGTTTCTTTTCTCTCAACATGAACCAGAAGGAGTAGTTGAATACCTCTTCAGGCCCAGAAGACTGGAAGCTTTAATTGGTTTCCTTGAGAATGATGATAATAATGATGTACAAAGGGCTGCTGCAGGTTTACTAGCTAACCTTCCTAAATCAGAACGAGAACTCACTATGAAGTTGATTGACTTGGGTGGCCTTGATGCAATCATAAGCATTTTGAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGATCCCACAAATATAGAGTCACAGCGTGATTTGGTTAAACGAGGAATATATCCTTTGCTTGTAAATTTTCTCAATACTGGTTCAGTAACAGCAAAAGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGTACTCCAAAGCTCACAGTTGTTTCCAAATCAACTGGTTGCTGCTGGTGGTTTAGATCATCACGAGTTCCTTTATGTTCAGCACATGGGAGTGTATGCAATGTGACTTCAACATTTTGTCTGTTGGAAGCAAATGCTTTGCCTGGTTTGATAAAGCTATTACAGGAGGAGGTTCATGCAACTGCTTATGAAGCCATACAAACACTTTCCACCTTGGTTTTGGAAGACTATCCTCAAAGAGGAGCTCGTGTATTGCATGAGTCAAATGCAATGAGACCCCTATTGGAAATTTTGAATTGGGGAACTGATTCTCTCAAGGCAGAAGCTCTAGGACTCTTGGAGAAGGTCTTTGTCTCAAAGGAAATGGTTGAATACTATGGAATAACAGCTAGATTACGTCTAGTTGGTCTGAATGGCATGAATATACACGGGGATGGTCACTTAAGGAGAAAAGCTGCCAGGGTACTGTCATTGCTTGAACGCTATTCAAAGTCATCGTCATCTGCAATATCTGGAGTTCTGGAGTGA 2967 0.4065 MVGLELIPVGTILAVLTSQVVRTANAAMDVLVDKESFKVLSKHLLDIAPVLKELQLQELNESQAARVALEYIVKEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQSEMQRVEFEASQSQLQIIDKLNHGIKEQKLDQAFANDMLEEIAMAVGVPVEPSEISKELASIRWEKEEAANRKELSEFIFLEQIIELLSRADAARDYEEVKKQYFERVQVIERYGSKENYIPPLNSFLCCITGAVMVDPVSLCTGTTCERSAIEAWFVDGKRTDPETEEVLEDTTLRSNIRLRESIIEWRELNYCFEIKSVRENLSTSSNVLLQESLSQIQALIRENSINKDWISIGGLTDIIITILGNSVSRDVKMKILITLKDAVEGHARNKEKVVESQGWGHIISCLQSDSRISKEAIDLLYELLQDRSGWNKSFCKKLSEHPSAVLYLVSLLKDPVSISTGIAEKILMELIEIDEENICSTAKFGWYKPLADRMIQGLESSRMSMAKVIVNLELKDLNLKLLGEQGVIPPLLEMLSSSIESKELSLSALVKLAGFHANKGIIAASGGVPLVLDLMFSRRTRSFITIKCCEILEKLSSDDDGIDFFVDGEGNQLELDSIITNLLALQQSPNSAHNFRKPALRTLLGICKFETGLVKKAVLAANGVSLILPLLDDSDSEIREIAINLLFLFSQHEPEGVVEYLFRPRRLEALIGFLENDDNNDVQRAAAGLLANLPKSERELTMKLIDLGGLDAIISILKNGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVVSKSTGCCWWFRSSRVPLCSAHGSVCNVTSTFCLLEANALPGLIKLLQEEVHATAYEAIQTLSTLVLEDYPQRGARVLHESNAMRPLLEILNWGTDSLKAEALGLLEKVFVSKEMVEYYGITARLRLVGLNGMNIHGDGHLRRKAARVLSLLERYSKSSSSAISGVLE 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi48g00069 988 ProSiteProfiles RPW8 domain profile. 1 151 IPR008808 -
Sebi48g00069 988 SMART arm_5 686 728 IPR000225 GO:0005515
Sebi48g00069 988 SMART arm_5 548 590 IPR000225 GO:0005515
Sebi48g00069 988 SMART arm_5 847 887 IPR000225 GO:0005515
Sebi48g00069 988 SMART arm_5 508 547 IPR000225 GO:0005515
Sebi48g00069 988 SMART arm_5 644 684 IPR000225 GO:0005515
Sebi48g00069 988 SMART arm_5 379 418 IPR000225 GO:0005515
Sebi48g00069 988 SMART arm_5 730 770 IPR000225 GO:0005515
Sebi48g00069 988 SMART arm_5 891 931 IPR000225 GO:0005515
Sebi48g00069 988 SMART arm_5 773 813 IPR000225 GO:0005515
Sebi48g00069 988 Gene3D - 309 460 IPR011989 -
Sebi48g00069 988 Pfam U-box domain 235 300 IPR003613 GO:0004842|GO:0016567
Sebi48g00069 988 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 698 726 IPR000225 GO:0005515
Sebi48g00069 988 Gene3D - 832 984 IPR011989 -
Sebi48g00069 988 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 308 IPR013083 -
Sebi48g00069 988 SUPERFAMILY ARM repeat 609 939 IPR016024 -
Sebi48g00069 988 SMART Ubox_2 235 298 IPR003613 GO:0004842|GO:0016567
Sebi48g00069 988 CDD RING-Ubox_PUB 236 285 IPR045210 -
Sebi48g00069 988 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 980 - -
Sebi48g00069 988 SUPERFAMILY RING/U-box 219 300 - -
Sebi48g00069 988 Coils Coil 98 125 - -
Sebi48g00069 988 ProSiteProfiles U-box domain profile. 231 305 IPR003613 GO:0004842|GO:0016567
Sebi48g00069 988 SUPERFAMILY ARM repeat 314 726 IPR016024 -
Sebi48g00069 988 Gene3D - 461 824 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi48g00069 Sebi-Chr48 2043483 2047645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi48g00069 235 945 U-box Gene Family AT1G76390 27.201 4.35e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi48g00069 - - gsj:114377374 1597.41