Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi48g00052 ATGGATTCACTGCCACCTCCACCAAAGACAATTCCCCCAAATGTTGTTCCTCTGAACGCAGAATCAGCAAAAATGTTGGAGCCAATGAAAAAGACATGTGATACAAAACGTTTGCCTGTGGCTAGGAGAGATGGCCACCCGGTTGAAGGTCTTGGGAGAAAGGTCATTGATAAACTTTGTGAAACATATGGTGTGTTGCAAAACAAGAACTTTTCATATGATGGTGAAAAAAGCTTATTCACTGTTGGTTCTCTACCACTTAATAAGGAGGAGTTTGAAGTTGTGTTAGAGGAAGTTTCACCAAGGAGGGTTGGAAGGAATGAGAGCCCTGACAACACAAATGATGGAGACTCCAAGAGAATGAGGCGTCAATCTCAGTCTAAAATTGTTAAGGTGGAGATCAGTTATGCAGCCAAAAGTCCAACGCAAGCTATTGAAAATGCTTTAAGTGGGGATGTCTACTTGTTCGCCAATCCTTCTTTCATGACAATCCAAGGAATTATACTGATATTGGAGGTGGTGTTCAAGGTTGTCGTGGTTTCCATTCAAGCTTCCGAGCTACACAAGGGGGGTTTATCTCTCAATGTTGATGTGTCAAATACAATGGTTGTAAAGCCTGGTCCTGTGCTGGACTTCCTTCTCCAGAATCAGAATGTTCAACAACCAAACTTAATTGATTGGGCCAAGGCAAAAAGAATGCTGAAAAGCCTCAGAATTAAGGCAAATAATATTGAGTACAAAATCACTGGATTGAGTGAGAAGCCCTGCAGGACACAGTCATTTTTATTAAAACATGGAAGGGATGCCAATGGTGAAGTGCAGTCAAGTGAGATCACAGTTTATGATTACTTTAAACGCCATAAAAAGATTGAATTGCGCTATTCTGCTGATTTTCCATGCATCAATGTTGGCAAACCAAAGCGTCCCTCTTATTTTCCTGTAGAGTCCTTAAGAAACAGCAGATATGGTAATTATCCTATGCTTCGGTCTTCTGGGATTAACATTGAACCTAACTTTATTCGAGTTGATGGACGTGTTCTGCAAGCTCCAAGGCTTGTAGTTGGACAGGGAGAGAACTTTTTTCCACGGAATGGGCACTGGAATTTCAACAATAAGAAACTAGTTGAACCTGGCAAGATAGAGCTCTGGGCCATTGTAAACTTTTCAGCTCGGTGGCATGAATTCCTCTCTGTTAACGTTGTGAGCTCAAGATGTTGGCCTCAAATTTCTCGTTATAGAGCTGCAGTTCCTACTCAGTCATCCAAAGTTGAGATGATTGCATCTCTATTTAAGCCTGTTTCTGATACCGAGGATGAGGGTATCATCAGGGAGCTGCTTATGGACTTTTACATAACTTCAGGGAAAAGGAAGCCTGAGAATATAATAATTTTCAGGAATGGAGTGAGTGAAACACAGTTCAACCAAGTCCTGAACATTGAATTGGATGAAATCATTAAGGCATGCAAACATCTTGATGAGAAGTGGACTCCAAAGTTTACTTTGATTGTTGCGCAGAAGAGACATCATACTAGGTTCTTCCTGTTCGACTATTCAGAAAACTTTCTACACATTCCAAATGGCACTGTCATTGACAGAAATATTTGTGATCCAAAAAACAATGACTTCTACATGTATGCTCATGCTGGGAAGATTGGGACAAGTCGACCTACTCATTACCATGTTTTACATGACGAAATCGGGTTCGATGCAGATGATTTGCAACATGTTGTGCATTCTCTATCTTATGTGTGTTAG 1755 0.4085 MDSLPPPPKTIPPNVVPLNAESAKMLEPMKKTCDTKRLPVARRDGHPVEGLGRKVIDKLCETYGVLQNKNFSYDGEKSLFTVGSLPLNKEEFEVVLEEVSPRRVGRNESPDNTNDGDSKRMRRQSQSKIVKVEISYAAKSPTQAIENALSGDVYLFANPSFMTIQGIILILEVVFKVVVVSIQASELHKGGLSLNVDVSNTMVVKPGPVLDFLLQNQNVQQPNLIDWAKAKRMLKSLRIKANNIEYKITGLSEKPCRTQSFLLKHGRDANGEVQSSEITVYDYFKRHKKIELRYSADFPCINVGKPKRPSYFPVESLRNSRYGNYPMLRSSGINIEPNFIRVDGRVLQAPRLVVGQGENFFPRNGHWNFNNKKLVEPGKIELWAIVNFSARWHEFLSVNVVSSRCWPQISRYRAAVPTQSSKVEMIASLFKPVSDTEDEGIIRELLMDFYITSGKRKPENIIIFRNGVSETQFNQVLNIELDEIIKACKHLDEKWTPKFTLIVAQKRHHTRFFLFDYSENFLHIPNGTVIDRNICDPKNNDFYMYAHAGKIGTSRPTHYHVLHDEIGFDADDLQHVVHSLSYVC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi48g00052 584 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 318 392 - -
Sebi48g00052 584 ProSiteProfiles Piwi domain profile. 455 584 IPR003165 GO:0003676
Sebi48g00052 584 Pfam PAZ domain 210 318 IPR003100 GO:0005515
Sebi48g00052 584 Pfam N-terminal domain of argonaute 49 155 IPR032474 -
Sebi48g00052 584 Pfam Argonaute linker 2 domain 317 352 IPR032472 -
Sebi48g00052 584 Gene3D - 393 584 IPR036397 GO:0003676
Sebi48g00052 584 MobiDBLite consensus disorder prediction 99 126 - -
Sebi48g00052 584 SMART Piwi_a_2 297 581 IPR003165 GO:0003676
Sebi48g00052 584 SUPERFAMILY PAZ domain 196 316 IPR036085 GO:0005515
Sebi48g00052 584 Gene3D paz domain 200 319 - -
Sebi48g00052 584 CDD PAZ_argonaute_like 206 315 - -
Sebi48g00052 584 SUPERFAMILY Ribonuclease H-like 407 582 IPR012337 -
Sebi48g00052 584 Pfam Piwi domain 400 583 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi48g00052 Sebi-Chr48 1680805 1685151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi48g00052 400 583 Eukaryotic Initiation Factors Gene Family AT5G43810 45.596 1.40e-43 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi48g00052 K11593 - cit:102615576 285.804