Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi48g00051 ATGCCAGTGAGGCAAATGAAGGAGAGTTCAGAGCAACACCTTGTGATAAAAACCCATTTGCAGAACCCCATGAATCCAGCTAAGAAGGTTACTAGGGCTGTCCAAAATGGCAAAGGTCCACCACCACTGCCACAAGAACCCCATAACCAAACTTCACCTCAAGCAAGGACCAGGGGAAGAAGAAGGAGCAAAGTTGGCAGAAAATATGATCAAGGAGATGTTTTGATGACACCCAGTTGCCGACCCTGCACTGTTGTGACAAATTCTGCAAATGGGCCTGTTGAAAATGGAAGCATCTCTGGTGACATAGAAATGGGTTATCCTACTTCAAGCAAGTCTTTGAGCCTTGCTCTTAGGCCAGGATATGGACAAGTTGGAACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCATTATGATGTCACTATTACACCTGAAGTGTCTTCCAAAGCAGTAAACAGATCCATCATAGCAGAACTTGTGAGGCTCTATAAAGAGTCTGACCTTGGGATGAGGCTTCCAGCATATGATGGCAGAAGAAATCTGTACACAGCAGGGGCACTTCCCTTTTCATGGAGAGAGTTTAAGATTAAGCTTTTAGAGGAAGAGGATGGAGTTAATGGCCCCAAGAGGGAAAGAGAATACAAAGTGGTGATCAAGTTTCTTTCACGGGCTAACTTGCATCACTTGGGGCAGTTTCTAGCTGGTAAGCGTGCTGATGCTCCACAGGAGACACTCCAAATTCTTGACACCGTACTAAGAGAGCTATCATTATCATCTAAGAGGTTTTGCCCCATTGGGAGATCCTTCTTTTCACCTGATATTAAAACACCACAAAGGCTTGGAGAGGGATTGGAGTCTTGGCGTGGATTTTACCAGAGCATAAGACCTACTCAGATGGGCCTTTCTCTCAATATTGATATGGCTTCTGCTACGTTCATTGAACCTCTTCCAGTAGTGGAATTTGTTGGCCAGCTATTAGGAAAAGATGTGCTATCAAGGCAATTGTCCGATGCTGATCGTATTAAGATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGGAGTGTTAGAAGAAAATATCGTGTTTCGGGTTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATAAGAATTCAACTATGAAGTCAGTGGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTAAATATACTCACCTTCCTTGCCTTCAAGTAGGAAATCAAAAGAAAGCTAACTATTTACCTATGGAGGCCTGCAAAATTGTTGAGGGACAACGTTATACTAAAAGGTTGAATGAGAAGCAAATTACCGCACTCCTGAAAGTTACTTGCCAGAGACCTCGTGATCGAGAAAATGACATTTTGCGGACCATTCAGCATAATGCTTTTGATCAAGATCCATATGCAAAGGAATTTGGGATTAAAGTCAGTGAAAAGCTAGCTTCTGTGGAAGCTCGAATTCTTCCTGCCCCTTGGCTTAAATATCATGAAAGTGGGAAAGAAAAGAATTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAACCGATGGGCGTGCATAAATTTTTCACGAAGCGTGCAAGATAGTGTTGCTCGCACTTTTTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCTCCATCTACAATGCCAAACCTGAGCAGGTAGAGAAGGCTTTGAAGCATGTTTACCATGTGTCAACAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGCAATATTGCCTGACAACAATGGTTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACTGAACTTGGTCTAATTTCTCAATGTTGCCTGACAAAGCATGTCTTTAAGATCACTAAGCAGTATTTGGCTAACGTGTCTTTGAAGATCAATGTCAAGATGGGAGGTAGAAATACTGTTCTTGTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTTACCCATCCTGAAAATGGAGAAGAATCTAGCCCCTCAATAGCAGCTGTAGTAGCATCCCAAGATTGGCCTGAAGTAACGAAATATGCAGGATTAGTTTGTGCTCAAGCTCATAGACAGGAACTTATACAGGATTTGTACAAAACTTGGCATGACCCTGTCCGTGGCTTAGTTAGTGGTGGCATGATCCGAGATTTGTTGGTTTCTTTTAGAAAAGCAACAGGACAGAAGCCACTGAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTATATGAGTTGGATGCAATTCGGAAGGCATGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACATCATACTCGGTTATTCGCAAACAACCACAGGGACAGGAACACTACAGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTTGATTCCAAAATCTGTCACCCAACAGAGTTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACAAGTCGTCCAGCTCATTATCATGTTCTGTGGGATGAAAACAATTTCACAGCAGATGGGATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCCAGGTGTACACGCTCTGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCTCGATTCTATATGGAACCAGATCTGCAGGAGAATGACTCCACTGGGGGTGGTAGTGCTCATCATGGTTCCAAGGCAACACGAGCAGCTGGAGACTGTGGTGTCAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTCTATTGTTAA 2946 0.4192 MPVRQMKESSEQHLVIKTHLQNPMNPAKKVTRAVQNGKGPPPLPQEPHNQTSPQARTRGRRRSKVGRKYDQGDVLMTPSCRPCTVVTNSANGPVENGSISGDIEMGYPTSSKSLSLALRPGYGQVGTKCIVKANHFFAELPDKDLNHYDVTITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRRNLYTAGALPFSWREFKIKLLEEEDGVNGPKREREYKVVIKFLSRANLHHLGQFLAGKRADAPQETLQILDTVLRELSLSSKRFCPIGRSFFSPDIKTPQRLGEGLESWRGFYQSIRPTQMGLSLNIDMASATFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDKNSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQHNAFDQDPYAKEFGIKVSEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVISIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGLVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNTTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDLQENDSTGGGSAHHGSKATRAAGDCGVKPLPALKENVKRVMFYC 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi48g00051 981 FunFam Argonaute 10 504 677 - -
Sebi48g00051 981 FunFam protein argonaute 10-like 683 981 - -
Sebi48g00051 981 Gene3D paz domain 320 444 - -
Sebi48g00051 981 SMART Piwi_a_2 614 935 IPR003165 GO:0003676
Sebi48g00051 981 Pfam Argonaute linker 1 domain 274 323 IPR014811 -
Sebi48g00051 981 Pfam N-terminal domain of argonaute 128 262 IPR032474 -
Sebi48g00051 981 Pfam Argonaute linker 2 domain 466 512 IPR032472 -
Sebi48g00051 981 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 104 936 - -
Sebi48g00051 981 SMART DUF1785_2 273 325 IPR014811 -
Sebi48g00051 981 CDD Piwi_ago-like 484 934 IPR045246 -
Sebi48g00051 981 ProSiteProfiles PAZ domain profile. 326 440 IPR003100 GO:0005515
Sebi48g00051 981 SMART PAZ_2_a_3 330 462 IPR003100 GO:0005515
Sebi48g00051 981 ProSiteProfiles Piwi domain profile. 614 935 IPR003165 GO:0003676
Sebi48g00051 981 FunFam Protein argonaute-2 319 445 - -
Sebi48g00051 981 Gene3D - 683 981 IPR036397 GO:0003676
Sebi48g00051 981 Pfam PAZ domain 349 456 IPR003100 GO:0005515
Sebi48g00051 981 MobiDBLite consensus disorder prediction 18 68 - -
Sebi48g00051 981 Gene3D - 504 677 - -
Sebi48g00051 981 Pfam Piwi domain 615 934 IPR003165 GO:0003676
Sebi48g00051 981 SUPERFAMILY Ribonuclease H-like 606 936 IPR012337 -
Sebi48g00051 981 CDD PAZ_argonaute_like 325 439 - -
Sebi48g00051 981 MobiDBLite consensus disorder prediction 939 958 - -
Sebi48g00051 981 Pfam Mid domain of argonaute 523 600 IPR032473 -
Sebi48g00051 981 SUPERFAMILY PAZ domain 320 479 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi48g00051 Sebi-Chr48 1606969 1614547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi48g00051 1 981 Eukaryotic Initiation Factors Gene Family AT5G43810 80.539 0.0 1642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi48g00051 K11593 - gmx:100816999 1799.64