Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi48g00030 ATGGGGAAGACAGGCAAATGGCTTAGGAACTTGCTGACAGGGAAGAAAGACAAAGAAAAAGAGAAGGAAAAATGTGTAACAAACCTTAGTTTGTCAAATGGCACAGAAAATCCAACTACTCCAATGTCTACAACTCCCAAGGAGAAAAGAAGATGGAGCTTCCGGAGATCATCAGCTTCCAAGGAATTGAATGTTGCAGAATCAAGTTCCACTGCTGCTTCAGTGACAGTGCAAACTGCCACAGATGCTGAGAATGATCAGAGAAAGCATGCCACTGCAACTGATGCTGTGATCTGCTTGAATTCTGATTCCAATGGAGGAGCTAGAAGAAGTATTGAAGAGGCTGCTGCCATTAAAATTCAATCTGTTTTTCGGTCCTACTTGGCAAGAAAGGCACTGTGTGCTCTTAGAGGTTTAGTGAAGTTGCAAGCACTAGTAAGGGGTCACTTGGTAAGAAAACAGGCCACGGAGACACTAAGATGTATGCAAGCTTTGGTCATAGCACAAGCCAGAGCTTGTGCTCAGAGGGCTAGAATGGTGTCAGAAGGAAAGCCTAATCAAGAGCAATCAACCTACAGAAAAACCACAAAGGACAATTTATTCATGCATATGTATAATGAAATGGACAGAGGCTTGGAAGAGAATATCAAGATTGTGGAGATGGATGTTTGTGAATCCAAAGGCAACTCAAAAGGCAGAAACAGCAATGCAAATCATGGAAATCAGGAATTTTCTGAGCATAGATTTTCTGCATATTATTCACCAAATGGATCATACTCAAAGAAAGAAAACTTCAAGGCATCACCTGCACCATCAGCATTGACTGAGTTGAGTCCAAGAGCATGCAGTGGACATTTTGAGGACTGTACCTTCAATACAGCACAGAGCAGTCCCCATTGCTACTCTGCTATGTCAAGAATAGAGGATTCAAAGCTTCCTTTTGCTTTTCCTAAACCAGCCTATGCAGAATCCATGTCCTATGACTACCCTTTATTCCCAAATTACATGGCTAACACAGAATCATCAAGGGCCAAAGTCAGATCACAGAGTGCTCCAAAGCAAAGGCCAGACTCATTTGAAAGGCAACCAAGCCGGCGAAGAGCTTCAGTGGAAGGAAGAAATGTACCAAAACCAGTGAGGATGCAGAGGTCATCTTCACATGTGGGTGCCACTGCCCAAAACTACCAATATCCATGGTCAATAAAGCTTGACAGGTCCTCAGTTTCACTCAAAGACAGTGAGTGTGGCTCTACAAGTACAGTGCTCACAAACACTAACTACTGCAGATCTCTTGTTTCATATGATGTTTTATCACTGCTTGTTTTGGCTGCAGCCTCATGGACGCAGGTACTGATACCGTTTTGCAGGAACTCCAAAAATCTAGAGTTCTTCTCCACTCCAGAGTCCTTATAG 1413 0.431 MGKTGKWLRNLLTGKKDKEKEKEKCVTNLSLSNGTENPTTPMSTTPKEKRRWSFRRSSASKELNVAESSSTAASVTVQTATDAENDQRKHATATDAVICLNSDSNGGARRSIEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQATETLRCMQALVIAQARACAQRARMVSEGKPNQEQSTYRKTTKDNLFMHMYNEMDRGLEENIKIVEMDVCESKGNSKGRNSNANHGNQEFSEHRFSAYYSPNGSYSKKENFKASPAPSALTELSPRACSGHFEDCTFNTAQSSPHCYSAMSRIEDSKLPFAFPKPAYAESMSYDYPLFPNYMANTESSRAKVRSQSAPKQRPDSFERQPSRRRASVEGRNVPKPVRMQRSSSHVGATAQNYQYPWSIKLDRSSVSLKDSECGSTSTVLTNTNYCRSLVSYDVLSLLVLAAASWTQVLIPFCRNSKNLEFFSTPESL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi48g00030 470 Pfam Protein of unknown function (DUF4005) 317 374 IPR025064 -
Sebi48g00030 470 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
Sebi48g00030 470 MobiDBLite consensus disorder prediction 1 52 - -
Sebi48g00030 470 Gene3D - 112 167 - -
Sebi48g00030 470 Pfam IQ calmodulin-binding motif 115 133 IPR000048 GO:0005515
Sebi48g00030 470 Pfam IQ calmodulin-binding motif 140 154 IPR000048 GO:0005515
Sebi48g00030 470 MobiDBLite consensus disorder prediction 27 47 - -
Sebi48g00030 470 MobiDBLite consensus disorder prediction 10 26 - -
Sebi48g00030 470 MobiDBLite consensus disorder prediction 342 357 - -
Sebi48g00030 470 PANTHER IQ-DOMAIN 5-RELATED 1 371 - -
Sebi48g00030 470 MobiDBLite consensus disorder prediction 358 373 - -
Sebi48g00030 470 SMART iq_5 112 134 IPR000048 GO:0005515
Sebi48g00030 470 SMART iq_5 135 156 IPR000048 GO:0005515
Sebi48g00030 470 ProSiteProfiles IQ motif profile. 113 141 IPR000048 GO:0005515
Sebi48g00030 470 MobiDBLite consensus disorder prediction 342 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi48g00030 Sebi-Chr48 1166168 1168225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi48g00030 1 431 IQD Protein Family AT4G14750 47.097 3.84e-107 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi48g00030 - - gmx:100817667 611.298