Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi48g00029 ATGGCAGAAACAAAAGAAGGATCAGGTTCAGAGATGTCTCTGAAGGATCAGGGCAACGAATTTTTCAAGTCAGGCAAGTATCTCAAAGCTGCTGCACTCTACACTCAAGCCATCAAGCAAGACCCTTCAAACCCCACACTCTATAGTAATCGTGCTGCAGCATTGCTGCAATTGGATAAGCTTAATAAAGCTCTTGATGATGCTGAAATGACTATAAAATTAAAACCCCAATGGGAAAAGGGATATTTCAGGAAGGGAAGCATATTGGAGGCCATGAAACGATATGATGATGCTTTAGCTGCCTTTCAGATAGCTTTGCAGTATAACCCACAAAGTCAAGAAGTGTCAAAAAAGATTAAGAAGATAAACCAACTAGTGAGAGATAGCAAGCGAGCTCAAGAAGTGGAGAATATGAGGTCTAATGTTGACATGGCCAAACATTTAGATACATTCAAACCTGAAATGTCTGGAAAGTATGGATCTGAAGAATGCTGGAAAGACATGTTCTTATTCCTTGTTGAGACTATGGAGACTGCTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAGAGTTTACTTTCTTCTTGATAAGGAAAAGACACAGACTGATAAGTATGCCCCAGTTGTGAATATTGATAAGGCCTTTGAATCACCGCATACACACAGCAACTGCTTTTCATTTCTGAGGCAGTATGCTGAGGAGTCTTTCTCCAAAGCAGCATGCTTAGTGACTCCTAAAAACATCATTGCTTATCCACAGGTCTGGAAAGGCCAAGGATCAAGGAAGTGGAAACATGCACAGAGTGATGGTTTCTTTGTACAATTTGAGTCACCCTCCCTGCGAAAACTGTGGTTTATTCCCAGTTCAAATGAAAAGGGACAGACATTGTGCAGGGAACCAGATGTTTTGGACATTGGTGCTCATGAAGTTCTTCCTCGCTTATTCAAAGAAAAGCTGCCCCGTTCTTAG 975 0.4123 MAETKEGSGSEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNPQSQEVSKKIKKINQLVRDSKRAQEVENMRSNVDMAKHLDTFKPEMSGKYGSEECWKDMFLFLVETMETAVKSWHETSSVDARVYFLLDKEKTQTDKYAPVVNIDKAFESPHTHSNCFSFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGSRKWKHAQSDGFFVQFESPSLRKLWFIPSSNEKGQTLCREPDVLDIGAHEVLPRLFKEKLPRS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi48g00029 324 SMART tpr_5 11 44 IPR019734 GO:0005515
Sebi48g00029 324 SMART tpr_5 45 78 IPR019734 GO:0005515
Sebi48g00029 324 SMART tpr_5 79 112 IPR019734 GO:0005515
Sebi48g00029 324 Coils Coil 51 71 - -
Sebi48g00029 324 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Sebi48g00029 324 Pfam TPR repeat 18 58 - -
Sebi48g00029 324 PANTHER TPR REPEAT CONTAINING PROTEIN 8 319 - -
Sebi48g00029 324 SUPERFAMILY TPR-like 13 122 IPR011990 GO:0005515
Sebi48g00029 324 Pfam Tetratricopeptide repeat 80 111 IPR013105 -
Sebi48g00029 324 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Sebi48g00029 324 Gene3D Tetratricopeptide repeat domain 6 162 IPR011990 GO:0005515
Sebi48g00029 324 FunFam serine/threonine-protein phosphatase 5 10 124 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi48g00029 7 122 U-box Gene Family AT3G07370 27.119 3.55e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi48g00029 - - gmx:100790717 626.32