Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi489g00025 ATGGAAGAGAAGAAGTTTATGTGCAAGTATTGCAGCAAGAGTTTCCCTTGTGGGAAGTCTCTTGGTGGTCACATCAGGACTCATATGATGAGTGACCATTCAGCTCCATCTCTAGCCAATGCTATGTTCAAGTTTGATGATGGAAGGAAGAGGAAGAGGGATTTGTTAGGTTCTGGAGATGATGGCCTAATTTATGGCCTTAGAGAGAACCCCAAGAAAACCACCAGGTTTGTGCATTCCAATGCCAATGCCACTTTGCAAATGGACAAGTTCTGTAAAGAATGTGGAAAAGGCTTTTCATCATTGAAAGCTCTCTGTGGTCACATGGCTTGTCACTCAGAAAAAGACAAGGGTGTCAATATTGAGAAGAAGCACAAATTGGTTATGGATAGTCAATCTGATACTGAGACTTCTGCTCCAAGGAGATCCAAGAGAATGAAGTTCAAGACCCTTAGCAACCACCCTCCTCATCCTCCTTCTTCTTCTGTTTCAGAGGTTGAGCAAGAGCAAGAAGAGGTGGCAAGGTGTTTGATGTTGTTGTCCAAAGATTCTAGCTACAGGGGTCGTTTTGCTTTGGTTACAGAGTCTTCTGATAACAACTCGGTTGTTCTGGAAGGGAAATCACCTTCTGTTGATATCAATTATGGTAAGAACTCTGTGTCTAATGCTTATGACTATGAGCTTGTGGAGGAGGAGAAGGTGCACAAGGATGCCAAGTTAAAGTCTGCTGAGATTGGTTATGATTCTGATAATTCTGATTCTGGGTATTTTAGATATGGTCCTAAAAAGGTAGACGCAGATGATTCAAGTGATGGGTTTTTCAGGAATGAAATAAAGCCTTCAAAGGTGGGATACATGACTGGGTTTGAGGATTATGATGTTGAATCAAAGAAGATGCTGAGCAGAGGAAGGAGCAGAAAAAGTGAATTTAAGAAAGTGGTCTTGGAGGATTTGGACAATGATAGAAAAGTTGGAGCTACAAGGAGGTTTGATTCAAGGAAGAGGCTCAACTATGATTCTGTTGGTCAAAATTTAGTTGGGGGTTCTACCAGGAAGACAGCAAATGGTTTTAGTACCAATGATGGAACCTACCAGCATGGTGGTAAAAGGTTGAAGTATGAGTGCTTGAACAGTGAAAGGGATATTGGTTTTGGCTCTGATTATGATTCAGCATATGAGAGTGATGAAAACAGCACTGATACTGATTCTTATCCTGCTTTAAAGGCTCACAACAGCAGGAACCTCAATGGAAAGAAGTCCAGCAAGGGAAAGAAGAAAATGAAGTCAAAGAAAAACAAGGAACATGAGTGTCCAATTTGCAACAAAATTTTCAGGTCAGGCCAAGCTTTGGGAGGTCACAAAAGATCCCATTTTGTTGGAGGTTCTGAAGAAAACACACTGGTGATTAGACCAGGTGCTCCTGCTGTTCCTTGCCTAATTGATCTTAATCTACCTGCTCCTATTGATGAATAG 1473 0.4148 MEEKKFMCKYCSKSFPCGKSLGGHIRTHMMSDHSAPSLANAMFKFDDGRKRKRDLLGSGDDGLIYGLRENPKKTTRFVHSNANATLQMDKFCKECGKGFSSLKALCGHMACHSEKDKGVNIEKKHKLVMDSQSDTETSAPRRSKRMKFKTLSNHPPHPPSSSVSEVEQEQEEVARCLMLLSKDSSYRGRFALVTESSDNNSVVLEGKSPSVDINYGKNSVSNAYDYELVEEEKVHKDAKLKSAEIGYDSDNSDSGYFRYGPKKVDADDSSDGFFRNEIKPSKVGYMTGFEDYDVESKKMLSRGRSRKSEFKKVVLEDLDNDRKVGATRRFDSRKRLNYDSVGQNLVGGSTRKTANGFSTNDGTYQHGGKRLKYECLNSERDIGFGSDYDSAYESDENSTDTDSYPALKAHNSRNLNGKKSSKGKKKMKSKKNKEHECPICNKIFRSGQALGGHKRSHFVGGSEENTLVIRPGAPAVPCLIDLNLPAPIDE 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi489g00025 490 MobiDBLite consensus disorder prediction 387 433 - -
Sebi489g00025 490 MobiDBLite consensus disorder prediction 415 431 - -
Sebi489g00025 490 Gene3D Classic Zinc Finger 1 117 - -
Sebi489g00025 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Sebi489g00025 490 Pfam C2H2-type zinc finger 435 457 - -
Sebi489g00025 490 Pfam C2H2-type zinc finger 92 114 - -
Sebi489g00025 490 Pfam C2H2-type zinc finger 6 29 - -
Sebi489g00025 490 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Sebi489g00025 490 MobiDBLite consensus disorder prediction 129 143 - -
Sebi489g00025 490 MobiDBLite consensus disorder prediction 129 165 - -
Sebi489g00025 490 MobiDBLite consensus disorder prediction 397 414 - -
Sebi489g00025 490 SUPERFAMILY beta-beta-alpha zinc fingers 91 457 IPR036236 -
Sebi489g00025 490 ProSitePatterns Zinc finger C2H2 type domain signature. 437 457 IPR013087 -
Sebi489g00025 490 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 490 - -
Sebi489g00025 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Sebi489g00025 490 SUPERFAMILY beta-beta-alpha zinc fingers 2 30 IPR036236 -
Sebi489g00025 490 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Sebi489g00025 490 SMART c2h2final6 435 457 IPR013087 -
Sebi489g00025 490 SMART c2h2final6 6 28 IPR013087 -
Sebi489g00025 490 SMART c2h2final6 90 112 IPR013087 -
Sebi489g00025 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 435 457 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi489g00025 Sebi-Chr489 362923 364395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi489g00025 1 490 C2H2 Transcription Factor Family AT1G26610 41.874 1.81e-98 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi489g00025 zf-C2H2_6 5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi489g00025 - - gmx:100805520 591.652