Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi488g00049 ATGCCATTTGGTTTGGTCTCAGCCTGGAACAAACGCCGTAGAAGCAAGTCTCAAGAACAAACAGACCCCTGGATTTACAAACCTGCACAACTTTGGCAACTTGAAGATCAAACACCACGACCTACAAAAAGGCTGCATGGATCATCTGTTTTCACTCTTAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGAAAATCTGCTTGGAAAAGGAGGATTTGGCAAAGTCTACCGGGGAACTTTGCGATCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGCTTCCAGCAATTAAAGAGGCAGAGGGGGAACGTGAGTTCCGAGTCGAAGTTGACATTTTGAGCAGACTCAACCATCCAAATCTTGTCTCTTTGATAGGCTATTGTGCTGATGGAAAGCATAGATTCCTAGTATATGAATATATGCATAATGGGAACCTGCAAGATCATTTGAATGGAATTGGGAAAAGAAACATGGATTGGCCTCTAAGACTACAAGTGGCACTGGGAGCTGCTAAAGGGCTTGCTTATCTCCATTCAAGTTCTGATGTTGGAATTCCTATAGTTCATAGAGATTTTAAATCGACCAATATTCTCTTAAATGCCAACTTTGAAGCAAAGATATCTGATTTTGGACTTGCCAAGTTAATGCCAGAAGGACAGGAGACACATGTAACTGCCAGAGTGCTTGGTACCTTTGGCTATTTTGATCCTGAGTATACATTGACCGGGAAACTCACTCTACAGAGTGATGTTTATGCTTTTGGTGTTGTTCTTCTGGAGCTTTTGACCGGACGTCGTGCTGTAGATCTAAGCCAGGGTCCTAGTGATCAGAACCTTGTACTACAGGTGAGGCACATACTGAATGACCGCAAGAAGCTTCGTAAGGTGATAGATCCAGAGATGGCTCGAAATTCTTACACCATTCAATCTATAGTCACGTTTGCCAATCTTGCATCAAGATGTGTCCGAACTGAGAGTAATGAGAGACCTTCAATGGCAGATTGTGTAAAAGAACTGCTAATGATTATCTATACAAATTCAAAAGGCTTGGGAATGGTTATGCATAGTTTGAGACTGATCTAG 1086 0.4217 MPFGLVSAWNKRRRSKSQEQTDPWIYKPAQLWQLEDQTPRPTKRLHGSSVFTLKEMEEATCSFSDENLLGKGGFGKVYRGTLRSGEVVAIKKMELPAIKEAEGEREFRVEVDILSRLNHPNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNGIGKRNMDWPLRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLNANFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTLTGKLTLQSDVYAFGVVLLELLTGRRAVDLSQGPSDQNLVLQVRHILNDRKKLRKVIDPEMARNSYTIQSIVTFANLASRCVRTESNERPSMADCVKELLMIIYTNSKGLGMVMHSLRLI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi488g00049 361 CDD STKc_IRAK 69 340 - -
Sebi488g00049 361 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Sebi488g00049 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Sebi488g00049 361 Pfam Protein kinase domain 64 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi488g00049 361 PANTHER OS01G0750732 PROTEIN 32 343 - -
Sebi488g00049 361 FunFam serine/threonine-protein kinase PBS1-like 31 141 - -
Sebi488g00049 361 FunFam receptor-like serine/threonine-protein kinase NCRK 142 352 - -
Sebi488g00049 361 Gene3D Transferase(Phosphotransferase) domain 1 142 351 - -
Sebi488g00049 361 Gene3D Phosphorylase Kinase; domain 1 32 141 - -
Sebi488g00049 361 PIRSF ILK 32 352 - -
Sebi488g00049 361 SUPERFAMILY Protein kinase-like (PK-like) 49 347 IPR011009 -
Sebi488g00049 361 ProSiteProfiles Protein kinase domain profile. 63 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi488g00049 Sebi-Chr488 779257 782623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi488g00049 46 344 Receptor kinase-like Gene Family AT3G58690 48.026 7.97e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Sebi488g00049 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi488g00049 - - gmx:100796654 684.485