Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi488g00034 ATGGCTGAGGCTGTGGTTGAAGTTGTGCTTGAAAATTTGAGCTCACTTGTTCAAAAAGAGCTTGGCCTATTTCTGGGTTTTGATCAAGACCTGAAAAGGCTTTCCAGTACACTCACTGCAATCAAGGCTACCCTTGAAGATGCTGAGGAGAAACAATTCTCAAACAGAGCTATAAAGGATTGGCTTAATAAGCTAACTGATGCAGCTCACGTCTTGGATGACATCTTGGACGAGTGTGCCACTGAAGCACTGGAGTTGGAGTACAAAGGAAAAGGATTCATGTGTGGTCTATCAGACAAGGAGTTTCATTTGACTGAAATGGTTACTGAGAGAAGAACTGGAGTCATTGACTGGCGCCAAACCATCTCAATCATTACTCAACCTCAAGTCTATGGAAGAGATGAAGATAAGGATAAAATTATAGACTTTTTGGTTGGTGATGCTTCTGGCTTTGAGGATTTATCAGTCTACCCAATACTAGGTCTAGGTGGACTTGGAAAAACAACACTTGCCCAACTCATCTTCAATGATGAGAGGGTAGTCAACCACTTTGAACAAAGAATCTGGGTGTGTGTTTCAGAAGATTTTAGTTTGAAGAGAATGACAAAAGCCATCATAGAATCTGCATCCAGGCGTGCCTGTGCAGATTTGGATCTAGAGCCACTACAGAGAGAACTTTTGGATTTGCTTCAAAGAAAAAGATATTTGCTGGTTTTGGATGATGTGTGGGATGATGAACAAGAGAATTGGCAGAGGCTGAAATCTGTATTGGCTTCTGGAGGTAAGGGTGCTTCAATTTTGGTGACTACTCGTCTTCCAAAGGTTGCAGCAATCATGGGAACAGTTCCTCCCCATGAATTACCAATGTTATCTGACAATGATTGTTGGGAGTTGTTTAAGCAACGATCCTTTGGACTAAATGAGGTAGAGCGGGCAGAGCTTGTGGTCATAGGGAAGGAGATAGTAAAGAAGTGTGGAGGTGTGCCTCTAGCAGCTAAAGCACTAGGAAGTCTTTTGCGCTTTAAAAGAGAGGAAAGAGAATGGATCTATGTGAAGGAAAGCAAGTTGTGGAGTTTACCACAAGATGAGAACTCCGTGATGTCTGCCTTGAGATTAAGTTACCTGAACTTGCCAGTAAAGTTGAGACAATGTTTTGCTTTCTGTGCATTATTTTATAAAGATCAAATAATAAGCAAACAATTTCTAATTGAACTTTGGATAGCTAATGGATTCATTTCATCCAACAAATTGTTGGATGCAGAAAATATAGGTGATGAGGTATGGAATGAATTATACTGGAGATCATTTTTCCAAGATATTCAGACGGATGCTTATGGCAACATTGCATATTTCAAGATGCATGATCTCGTTCATGATCTTGCTCAATCGGTTACAGAAGAAGTCTGTTGCATTACAGGTGGCAATGTTGTAACTAGTGTGAGTGAAAGAATTCGCCATCTCTCAATTTACCGGTGGGATGCATTTGAGGAAGTCGATTCAATCCAATTGTTGCACCAAGTCAAATCTTTGAAGACCTACATAACGGGGAATTCCTATGACAGTATCCAACTTTCACCCAAGGCATTGAAATGTTATTCTTTGAGGGTGCTTGTGATCAATCATGGGCTAAACAATTTCTCTAATTCAAATATTGGTCATTTGAAATATCTGAGATACTTGAATGTTTCTCACAGTGACTTCAAAACTCTTCCCAAATCCCTTTGTTGCCTGTGGAATTTGCAAAATTTGAAGTTAGAACACTGTCGTTATCTACAAAAGTTACCTAATGGTTTGATTCGCCTAAAAGCTCTACAACATCTATTTTTGAGGGGGTGCAACTCATTATCAAGCTTGCCCGCTCAGATAGGGAAATTGACTTCCCTAAGGACTTTAAGCATATATGTTGTTGGCAAGAAAAGAGGGTTCCTTTTGGCAGAATTGGGACAATTGAACCTTAAAGGAAAGCTTCACATCAAGCATTTGGAGAGAGTAAAAAGTGTAATGGATGTCAAAGAAGCCAATATGTCAAGTAAGCATGTGAACCGATTGCTGTTGTCATGGGGGAGAAATGAAGAGGCCCGGTTACAAGAAAATGTTGAGCAAATTCTTGAAGTGCTTCAACCTAATATCCAACAACTTCAAGCTTTGGGCATCAGAGGATATACATGTGTCAGTTTCCCACAATGGATGTCTAGTCCTTTTCTCAAGCGCTTGGTCCTCGTGGATTGCAAAAGTTGTTTACACCTTCCACAATTGGGGAAACTGCCATTTCTAAAGGAAATAAGAATAATCAACATGAGTCAAGTAAAATATCTGTTTGAGGAGTTGTATGATGGTGGAGTTGCAGTAGGTTTCGTTGCTTTGGAACTTCTGGAGCTGTTGCGGCTACCAAACCTGACAAGGTTGTCATCAAGAGAGGGTGCAGAAAACATATTCCCACGCCTTTCCAAACTTCAAATTTACGAATGTCCTAATTTGTTGGGCTTGCCTTGCCTTCCATCTCTAAAAGATCTATGTATAAAAGGGGAATGCAACATGGATTTACCAAGTTCAATTCATAAGCTCGGTAGTCTCGAATCCTTACTTTTCTTGGATAATGAGGAGTTAACTTGCTTTCCAGATGGGATGCTAAGAAACCTTGCTTCTCTTAAGATATTGGAATTTCATGGGTGCTCCAAACTTGAGCAACTCTCTGCTGAAATCATTAACCTTCATGATCTCCAAGTACTATATATTAAAAGTTGCCAAAGCCTTGTGTCATTGACAGATGGTGGAGTACTTCAAGGGTTGCACTCTCTCAGGATATTAGAAATTGTGGATTGCCCTAAGTTCAAGGTGTCCCTGTCAGCATACATGACTTGTCTTGAGGAATTAGTGATTTGCAGGTGTTCAGAGGTGGAAGGTTTACATGAGGCTTTACAACATATGACTGCACTCCAATCCTTAACATTTGATGATCTTCCAAACATAGCTTCCCTGCTTGATTGTTTTGGAAACCTTACTGGTTTAAAAAATTTGAGCATTTTCAAATGCCCCGAGTTGGCAAAGCGATGTGAGAAGGAAAAGGGGACGACTGGCCAAAAATCGCGCACATTCCGCATATTCAAATACATATGGGCACAATGA 3126 0.4034 MAEAVVEVVLENLSSLVQKELGLFLGFDQDLKRLSSTLTAIKATLEDAEEKQFSNRAIKDWLNKLTDAAHVLDDILDECATEALELEYKGKGFMCGLSDKEFHLTEMVTERRTGVIDWRQTISIITQPQVYGRDEDKDKIIDFLVGDASGFEDLSVYPILGLGGLGKTTLAQLIFNDERVVNHFEQRIWVCVSEDFSLKRMTKAIIESASRRACADLDLEPLQRELLDLLQRKRYLLVLDDVWDDEQENWQRLKSVLASGGKGASILVTTRLPKVAAIMGTVPPHELPMLSDNDCWELFKQRSFGLNEVERAELVVIGKEIVKKCGGVPLAAKALGSLLRFKREEREWIYVKESKLWSLPQDENSVMSALRLSYLNLPVKLRQCFAFCALFYKDQIISKQFLIELWIANGFISSNKLLDAENIGDEVWNELYWRSFFQDIQTDAYGNIAYFKMHDLVHDLAQSVTEEVCCITGGNVVTSVSERIRHLSIYRWDAFEEVDSIQLLHQVKSLKTYITGNSYDSIQLSPKALKCYSLRVLVINHGLNNFSNSNIGHLKYLRYLNVSHSDFKTLPKSLCCLWNLQNLKLEHCRYLQKLPNGLIRLKALQHLFLRGCNSLSSLPAQIGKLTSLRTLSIYVVGKKRGFLLAELGQLNLKGKLHIKHLERVKSVMDVKEANMSSKHVNRLLLSWGRNEEARLQENVEQILEVLQPNIQQLQALGIRGYTCVSFPQWMSSPFLKRLVLVDCKSCLHLPQLGKLPFLKEIRIINMSQVKYLFEELYDGGVAVGFVALELLELLRLPNLTRLSSREGAENIFPRLSKLQIYECPNLLGLPCLPSLKDLCIKGECNMDLPSSIHKLGSLESLLFLDNEELTCFPDGMLRNLASLKILEFHGCSKLEQLSAEIINLHDLQVLYIKSCQSLVSLTDGGVLQGLHSLRILEIVDCPKFKVSLSAYMTCLEELVICRCSEVEGLHEALQHMTALQSLTFDDLPNIASLLDCFGNLTGLKNLSIFKCPELAKRCEKEKGTTGQKSRTFRIFKYIWAQ 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi488g00034 1041 Gene3D Ribonuclease Inhibitor 643 839 IPR032675 -
Sebi488g00034 1041 Gene3D Ribonuclease Inhibitor 474 638 IPR032675 -
Sebi488g00034 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 388 IPR027417 -
Sebi488g00034 1041 SUPERFAMILY L domain-like 437 866 - -
Sebi488g00034 1041 SUPERFAMILY RNI-like 790 1012 - -
Sebi488g00034 1041 Gene3D - 115 282 IPR027417 -
Sebi488g00034 1041 Gene3D - 5 112 - -
Sebi488g00034 1041 PANTHER DISEASE RESISTANCE PROTEIN RP 33 823 IPR044974 GO:0006952
Sebi488g00034 1041 Pfam Rx N-terminal domain 5 87 IPR041118 -
Sebi488g00034 1041 CDD RX-CC_like 2 110 IPR038005 -
Sebi488g00034 1041 PRINTS Disease resistance protein signature 229 243 - -
Sebi488g00034 1041 PRINTS Disease resistance protein signature 878 894 - -
Sebi488g00034 1041 PRINTS Disease resistance protein signature 325 339 - -
Sebi488g00034 1041 PRINTS Disease resistance protein signature 156 171 - -
Sebi488g00034 1041 Gene3D - 373 464 IPR036388 -
Sebi488g00034 1041 Coils Coil 31 51 - -
Sebi488g00034 1041 Gene3D - 289 372 IPR042197 -
Sebi488g00034 1041 Pfam NB-ARC domain 134 374 IPR002182 GO:0043531
Sebi488g00034 1041 Gene3D Ribonuclease Inhibitor 846 1033 IPR032675 -
Sebi488g00034 1041 FunFam Probable disease resistance protein At1g63360 374 463 - -
Sebi488g00034 1041 FunFam Probable disease resistance protein At1g61300 114 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi488g00034 Sebi-Chr488 591044 594282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi488g00034 153 642 WRKY Transcription Factor Family AT4G12020 24.689 7.84e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi488g00034 - - tpra:123906781 1249.96