Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi488g00026 ATGGGTTCATCCTCAGAAAAACCTTCCTCCTCTGCATTGAAGCTTTTTGGTTTCCCTTTAAGTACTGCTATTATATGCAGTGAGGAAGCTCCTCAGAAAATCGAGTGTCCATACTGTGACCGCAAATTTCAGAATTTTCAAGCTTTGGAAGGTCACCAAAATGCGCATAGGAGAGAGAGGCTAATGGCTAGGCTATCCCGACTGCACTATATTCATCCACATCAAAACAACAGCCAATTGCTTCTACACACTGAACAACCAACTGTATTATTATCACAAACCTCTGCTGCTGATGCTGATCATGAAGCTCAGATCTGGAGAGAATTACCAAAGCTACCTGTGGCGGAGCCACCAGGTACGGGCCACCCTCCTATAAGACAGGTACCAAGGCCAGTACCAGGGGTTGATAATGATAGTAATCTCGATCTTGAATTGAGACTAGCTACCAGCTCCTTTGAGGAATCTCGGAGATGA 474 0.4494 MGSSSEKPSSSALKLFGFPLSTAIICSEEAPQKIECPYCDRKFQNFQALEGHQNAHRRERLMARLSRLHYIHPHQNNSQLLLHTEQPTVLLSQTSAADADHEAQIWRELPKLPVAEPPGTGHPPIRQVPRPVPGVDNDSNLDLELRLATSSFEESRR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi488g00026 157 MobiDBLite consensus disorder prediction 116 130 - -
Sebi488g00026 157 MobiDBLite consensus disorder prediction 112 157 - -
Sebi488g00026 157 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Sebi488g00026 157 SUPERFAMILY beta-beta-alpha zinc fingers 34 62 IPR036236 -
Sebi488g00026 157 Pfam C2H2-type zinc finger 35 59 - -
Sebi488g00026 157 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Sebi488g00026 157 PANTHER ZINC FINGER PROTEIN 5 6 150 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi488g00026 Sebi-Chr488 413323 413796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi488g00026 10 76 C2H2 Transcription Factor Family AT1G67030 39.773 8.11e-11 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi488g00026 zf-C2H2_6 9.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi488g00026 - - gmx:102669455 123.25