Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi487g00030 ATGGAAACGTGTTTCATTGTTGACCGAATTAAGTTGTATTCTTCTGTAGGGATAATAGGGCATCTTTTCTTTTTAAGAATGGTTGGTAAAAGAATTTTGTCCTACCCAACCCTCTATGCGTTACGCAAAATGGAGGAGGAAAGAGATGGGTGGTTGATGCAACATCAGCCTTCCATGAAGCAGATTATGGCCATTATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTTTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCAATCTTGCAACGAGATACTGCAATTGTTGAACGAAACAATGCATTAATGGAACGGGATAATGCAATTGCAACCCTTAAGTTTAGAGAAAAATCCTTGACCAGTGGGAGTATGTCATCATGCCCTCCAGGATGCCAAATCTCACGGGGAGTCAAGCATATACATCATTTGCAGCAACAGGTAAACCATTTACCCAATATGGTTGATGCTTCTTACAGCACACGGGAAATGCACACGAGTGATGCTCTCCCAGCTGCACCCATTCCTTTAGAGGCTGGGAAGTCTCGGCAGGCCAAGCGACCAAAGGAAGGTAAGTCAGTTTCACCTAATAAGAAGACTCCAAAAACTAGAAAGGTCAAGAAGGAGAGTGAAGATTTAAATAAGATGATGTTTGCCAATAGCAAGGCACATGAGTGGAAGAGTAGTCAGGAGATCGTAAATGGAGATGATCTTAACAAGCAATTAGAGGTGTCAAAGGCTGACTGGAAAGCTCAAGACTTGGCATTAAATCAGGTTGCATATGATGAGTCAACCATGCCAGCCCCAGTGTGTTCTTGTACTGGTGTTCCAAGGCAGTGCTACAAATGGGGGAATGGAGGTTGGCAATCTGCTTGTTGCACAACCACCTTATCAGTGTATCCCCTTCCAGCTGTGCCCAACAAGAGGCATGCTCGGATAGGCGGTAGAAAAATGAGTGGAAGTGCTTTCAGTAAACTGCTTAGCCGGCTTGCAGCAGAAGGGCATGATCTGTCAAACCCAGTTGACCTTAAAGACAATTGGGCCAAACATGGGACAAATCGATATATCACAATAAAGTAG 1095 0.4429 METCFIVDRIKLYSSVGIIGHLFFLRMVGKRILSYPTLYALRKMEEERDGWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDTAIVERNNALMERDNAIATLKFREKSLTSGSMSSCPPGCQISRGVKHIHHLQQQVNHLPNMVDASYSTREMHTSDALPAAPIPLEAGKSRQAKRPKEGKSVSPNKKTPKTRKVKKESEDLNKMMFANSKAHEWKSSQEIVNGDDLNKQLEVSKADWKAQDLALNQVAYDESTMPAPVCSCTGVPRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARIGGRKMSGSAFSKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi487g00030 364 Coils Coil 78 98 - -
Sebi487g00030 364 PANTHER - 55 364 IPR010409 -
Sebi487g00030 364 Pfam GAGA binding protein-like family 50 364 IPR010409 -
Sebi487g00030 364 MobiDBLite consensus disorder prediction 167 215 - -
Sebi487g00030 364 SMART GAGA_bind_2 44 364 IPR010409 -
Sebi487g00030 364 MobiDBLite consensus disorder prediction 187 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi487g00030 Sebi-Chr487 635283 636777 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi487g00030 92 364 BBR or BPC Transcription factor family AT5G42520 61.644 2.58e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Sebi487g00030 GAGA_bind 2.2e-102 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi487g00030 - - gmx:100783502 544.273