Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi487g00028 ATGCAGCCATTCAAGAAAGAAATCTGGCCCTTCCTTCAGATGCTGGGAAGTCTCGGCAGGCCAAGTGACCAAGGGAAGGTCAAGAAGGAGAGTGAAGATTTAAATAAGACGATGTTTGCCAATAGAAAGGCACATGATTGGAATAGTAGTCAGGATATTGTAAATGGAGGAGATGATCTTAACAAGCAGTTAACGGTGTCAAAGGCTAATTGGAAAGCTCAAGACTTGGCATTAAATCAGGTTGTATATGATGAGTCAACCATGCCAGCGCCAGTGTGTTCTTGTACTGGTGTTCCAAGGCAGTGCTACAAATGGGGGAATGGAGGTTGGCAATCTGCCTGTTGCACAACCACCTGA 357 0.451 MQPFKKEIWPFLQMLGSLGRPSDQGKVKKESEDLNKTMFANRKAHDWNSSQDIVNGGDDLNKQLTVSKANWKAQDLALNQVVYDESTMPAPVCSCTGVPRQCYKWGNGGWQSACCTTT 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi487g00028 118 PANTHER - 27 118 IPR010409 -
Sebi487g00028 118 SMART GAGA_bind_2 1 118 IPR010409 -
Sebi487g00028 118 Pfam GAGA binding protein-like family 28 118 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi487g00028 Sebi-Chr487 602742 603145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi487g00028 21 118 BBR or BPC Transcription factor family AT5G42520 60.396 2.62e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Sebi487g00028 GAGA_bind 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi487g00028 - - tpra:123887069 172.94