Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi487g00022 ATGGATGAGAAGATAGATGCGGCAGACAAGAAGGTGTTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCCTGAAGGGTAAACTGGGAGACTGGAAAGAATTCTTGGACAGTTATGATAAGAAGTTTGGGTCATGTTTGAGTGATCCGGCAAAGAGGCCCCATGAGACATTGGCTGCATTTCTAAAGACATTTTCAAAGGATGAGGATTTGAAGTTTTTTGCGAACATCATGCAACATCATTCAAATCAATACACAGTGGAGCAAATGAAAGATAATTCTCATCATTCCCCTGAGCAGAGGCTAGTCCAAGTAACTCTCCAGCACCCGTTATATCCGTTGGATTATTCGTTTTCATCAATTGATGAGGGATGGGTAATTATAAAGCTTAAAAAAAAATCCAAGGTGATGAAGTCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCATTAGTCAAAGTCTGTGTGGTAGACCACAATTTAGAGGTCAAACTACACGAACTTGTAAAACCTGACAAAGCAATTGTAGACTATAGAACAGAGATTACTGGTGTCTCTTCACAAGATCTAGAGTCAGTGAGTTGCTCCTTAGCTGATATACAGAAATCGATGAAGAAGTTGTTAGCAAATGGAACCATATTAGTGGGACACAGTTTACATAATGATCTACGAGTTCTGAAGATAGATCATGTAAGAGTGGTTGACACTGCATATATCTTCCACTCCTTGGATGGATCTATTCACAGGAGACCTTCTTTGAATAGTTTATGTCAGGCTGTGTTAGGCCATGAAGTTCGGGAAAAGGGTGCTCCACATAACTGTCTAGATGATGCATGTGCAGCAATGAAACTTGTTCTTGCAAAGATCAAACACGGTGTTGATAGAGAATTTCCATTAGCGCTGGTTCAAGAGCCTGTTCCAGAAAGTGAGACTGCAAAGCTGCTTCTTCATGGGATACCAGCCACTGTGAACAGTGAAACACTACATGAAATTGTTCCTGGAGACTTCACAATAGAACCAAAGCCTTCTAGGAAAGGTCCACGAGGAAAATATTCTGCCTTAGCCATCTTTAAGAACCCACAAGAGGCACATGCTGCCTATGAAAATGTCCATGGCGACCAAACAAAGGATTCGTTTGGACGTCCTCAGAAACTTGTCACATTTCAGCTAAGCGCAGACAGGACTGTCAGTCTGTATGTTCGGAAAATGACAACTGGTGAACCCCATGACCCAAATCCATCTAAGAGAGCTTTACAAGTGGATAATGCAGTTGATGTTTCCAAGAAAGCAAAAACGGATCCTGAAATTGAAGAGGCCCTAGGCTCTTCTAAGGGTGACATTGGCACCTACTTGAATGAGATTGAAGCGCTGAATCAACGACTGAAGCAAAATGATTTAGAGATTGAATCATTGAGGGAACAATTGAGGCAAAAAGATTTTGAAATCGCCATGCTGCATAAAATGGTTATTCTTATAAAGTTATGGCAATGTCTTAACAACCGTTTGGGAGAAACCTAG 1542 0.4092 MDEKIDAADKKVLVDIVKLAQKRGLKGKLGDWKEFLDSYDKKFGSCLSDPAKRPHETLAAFLKTFSKDEDLKFFANIMQHHSNQYTVEQMKDNSHHSPEQRLVQVTLQHPLYPLDYSFSSIDEGWVIIKLKKKSKVMKSTAMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHELVKPDKAIVDYRTEITGVSSQDLESVSCSLADIQKSMKKLLANGTILVGHSLHNDLRVLKIDHVRVVDTAYIFHSLDGSIHRRPSLNSLCQAVLGHEVREKGAPHNCLDDACAAMKLVLAKIKHGVDREFPLALVQEPVPESETAKLLLHGIPATVNSETLHEIVPGDFTIEPKPSRKGPRGKYSALAIFKNPQEAHAAYENVHGDQTKDSFGRPQKLVTFQLSADRTVSLYVRKMTTGEPHDPNPSKRALQVDNAVDVSKKAKTDPEIEEALGSSKGDIGTYLNEIEALNQRLKQNDLEIESLREQLRQKDFEIAMLHKMVILIKLWQCLNNRLGET 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi487g00022 513 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Sebi487g00022 513 Gene3D - 137 306 IPR036397 GO:0003676
Sebi487g00022 513 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 308 IPR047021 GO:0004527
Sebi487g00022 513 CDD REX1_like 143 294 IPR034922 -
Sebi487g00022 513 SMART exoiiiendus 141 302 IPR013520 -
Sebi487g00022 513 Coils Coil 462 486 - -
Sebi487g00022 513 FunFam Small RNA degrading nuclease 3 137 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi487g00022 Sebi-Chr487 526596 532679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi487g00022 118 308 C2H2 Transcription Factor Family AT3G27970 29.817 9.19e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi487g00022 K14570 - gmx:100785565 758.444