Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi486g00042 ATGCAGGCGGTGGTAGCATCTTTTGAGTATGTTTCAGGCCTCAGCAATGCAGCTCCTTATGCAAGTTTGGCTATAAAAGCCATGTCCAAACATTTCAGGTGCTTAAAGAATGCAATTACTGACCAGCTTCAGTTCACCAATAAGGCTCATTTTCACATAAGCAACAGTAAAGAAGGATCTCCAAAGTTTGGAAACAGTGATAGAGGCCCTTACAGCCAAAGATCAGGGTTTCTTGAGCATCAACCTGTTTGGCGACCTCAAAGGGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCCACTGATACAGACAAGCTAATGTTGGCTAAACAAACCGGTCTGTCTCGGAGTCAGGTGTCTAATTGGTTCATCAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTAGAAACGCGACAAGCTCAAAAGAATTCACAGAAGGAAGAACATTGTAGGAATAAACCAAGTGAGAATTTGCCTTCAGACAACTCTCTTGTTTCTGAGAATCCATCTACCTCCACAGATAAATATCAGGATGCTCCTTACAAACGCACTATAAATGAAATTCCTAATATACCAGTTAGGAGTCAAGAACAACTGAATCTGCCCTGCACAGGCAACCAACCAGTAGGTGTTGGAGTGAACATTGGGAGTGGAAGCAATAATAGTGTGTCACTGACACTAGGTCTTTATCAAAATCATGGGATTGGTTTAGCTGAACCTTTTCCTTTGAGTGCAGCTCAGCGTTTTGGTTTAGCTCTTGAAACCAATAATGAAGGTTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGAAGAGAGGTTATTGGAAGCCAACTGTTGCATGACTTTGTAGGTTGA 915 0.423 MQAVVASFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQFTNKAHFHISNSKEGSPKFGNSDRGPYSQRSGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKNSQKEEHCRNKPSENLPSDNSLVSENPSTSTDKYQDAPYKRTINEIPNIPVRSQEQLNLPCTGNQPVGVGVNIGSGSNNSVSLTLGLYQNHGIGLAEPFPLSAAQRFGLALETNNEGYVMSGFESQNRHFGREVIGSQLLHDFVG 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi486g00042 304 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 166 - -
Sebi486g00042 304 MobiDBLite consensus disorder prediction 155 172 - -
Sebi486g00042 304 MobiDBLite consensus disorder prediction 173 196 - -
Sebi486g00042 304 Gene3D - 87 149 - -
Sebi486g00042 304 FunFam BEL1-like homeodomain protein 9 87 149 - -
Sebi486g00042 304 SMART HOX_1 84 148 IPR001356 GO:0003677
Sebi486g00042 304 CDD homeodomain 84 145 IPR001356 GO:0003677
Sebi486g00042 304 MobiDBLite consensus disorder prediction 155 197 - -
Sebi486g00042 304 ProSiteProfiles 'Homeobox' domain profile. 81 144 IPR001356 GO:0003677
Sebi486g00042 304 Pfam Homeobox KN domain 101 140 IPR008422 GO:0003677|GO:0006355
Sebi486g00042 304 SUPERFAMILY Homeodomain-like 86 151 IPR009057 -
Sebi486g00042 304 Pfam Associated with HOX 1 40 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi486g00042 Sebi-Chr486 702235 703411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi486g00042 1 304 Homeobox Transcription Factor Family AT5G02030 51.672 7.33e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sebi486g00042 POX 4.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi486g00042 - - gmx:100805512 557.37