Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi486g00016 ATGCAGATATCATCTCAGCTCCAAACCTCTCGCTCAAAGGTAGAAATCCTCCCCGGCTTTCAAGGTCCTCTTCCCTTTCAACTCGAAACAGGGTATGTGGGACTAGGGGAAAATAATGATGATGATGATATGCAGGTGTTCTACTACTTTATTAAATCAGAGAACAACCCTGAGAAAGACCCTCTTATGCTTTGGCTAACTGGTGGTCCACTTGCATTTGAAATCAAGGAGTATGATGGAAACTTGCCTAATTTGATCTTGAGGCCACAATCCTGGACAAAGGTATGTAGCATTATTTTTGTAGATTTGCCACTTGGAACTGGTTTCTCATATGCAAAAAATCTCCTTGCTCAACGAAGTGATTGGAAATTAGTTCACCATGCCCATCAATTCCTTAGGAAGTGGCTGATTGATCACCCGGAATTTCTTTCAAATGATTTGTACATTGGAGCTGATTCATACTCCGGCATTCCTGCTCCTGCAATTGTTCAAGAAATTTCAAATGGAAATGAAAAAGGTCTCCAACCATGGATAAATCTCCAGGGATATCTTCTCGGGAACCCTATAACAACATACAGAGAAAAAAATCATCAAATCCCATGTGCTCATGGAATGGGGCTTATTTCTGATGAACTCTATGAGTGCCTTTCAGGAATTAATATGTTTAACATTTTGGATCGCTTTTGCGAAGATGATTCAAAATTGTTGAGGAGATCTTTGACTCAGGAGTTGAAGGTCTCTCTTAGTCCTCATCTCACGGTGCCAGAATTAAGCTGCCAAGGAACTATAGGGGAATGGAAACGTTGTTACACTACTGATTTTAAGTATGAGATCCCCAGTAGCTTTGAGTTTCATGTAAATCTCAGTGCAAAAGGCTACCGTTCCTTGATATATAGTGGAGATCATGATCTAGTTGTTCCTTTCATGTCTACACAAGCGTGGATAAGGGCTCTAAACTACTCCATTGTGGAAGATTGGAGGCCATGGCTTGTTGATGGCCAAGTCGCAGGATACACAAGGACTTACTCGAATCGAATGACATTTGCTACTGTGAAGGGTTCAGGACATACAGCTCCTGAGTACAAGCCTGACGAAGGTTTTGCCATGTTCACTAGGTGGATATCTAGTAAGCCTTTGTAA 1140 0.414 MQISSQLQTSRSKVEILPGFQGPLPFQLETGYVGLGENNDDDDMQVFYYFIKSENNPEKDPLMLWLTGGPLAFEIKEYDGNLPNLILRPQSWTKVCSIIFVDLPLGTGFSYAKNLLAQRSDWKLVHHAHQFLRKWLIDHPEFLSNDLYIGADSYSGIPAPAIVQEISNGNEKGLQPWINLQGYLLGNPITTYREKNHQIPCAHGMGLISDELYECLSGINMFNILDRFCEDDSKLLRRSLTQELKVSLSPHLTVPELSCQGTIGEWKRCYTTDFKYEIPSSFEFHVNLSAKGYRSLIYSGDHDLVVPFMSTQAWIRALNYSIVEDWRPWLVDGQVAGYTRTYSNRMTFATVKGSGHTAPEYKPDEGFAMFTRWISSKPL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi486g00016 379 PRINTS Carboxypeptidase C serine protease (S10) family signature 101 111 IPR001563 GO:0004185|GO:0006508
Sebi486g00016 379 PRINTS Carboxypeptidase C serine protease (S10) family signature 346 359 IPR001563 GO:0004185|GO:0006508
Sebi486g00016 379 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 160 IPR001563 GO:0004185|GO:0006508
Sebi486g00016 379 PRINTS Carboxypeptidase C serine protease (S10) family signature 88 100 IPR001563 GO:0004185|GO:0006508
Sebi486g00016 379 Gene3D alpha/beta hydrolase 19 244 IPR029058 -
Sebi486g00016 379 Gene3D alpha/beta hydrolase 250 378 IPR029058 -
Sebi486g00016 379 Pfam Serine carboxypeptidase 18 235 IPR001563 GO:0004185|GO:0006508
Sebi486g00016 379 Pfam Serine carboxypeptidase 261 375 IPR001563 GO:0004185|GO:0006508
Sebi486g00016 379 FunFam Carboxypeptidase 282 376 - -
Sebi486g00016 379 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 14 363 IPR001563 GO:0004185|GO:0006508
Sebi486g00016 379 SUPERFAMILY alpha/beta-Hydrolases 17 378 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi486g00016 Sebi-Chr486 263858 269887 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi486g00016 10 43 Calmodulin-binding Proteins AT2G22960 55.882 4.09e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi486g00016 K16296 - gmx:100780069 612.068