Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi486g00012 ATGTTGAACCGTGGGTCAAATGTTTCGGCTGAAGTTGGTGGTTCGGGTGAGAGTGACGATGAGCTGTATGAGCAGCAATGGAAGGCTTGCGCGGGACCACTGGTGGATGTTCCTCATGTTGGACAGAGGGTCTTCTATTTCCCTCAGGGACACATGGAACAATTAGAGGCGTCCACTAATCAGGAACTGAATCAGAGGATCCCTCTCTTGAAACTTCCCACAAAGATCCTCTGTCGCGTCGTGAACGTCCATTTACTGGCTGAACAAGAAACGGATGAGGTCTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGATGAGCCTACAAGCCCTGATCCGTGCACTGCTGAACTTCCGAGGCCAACAGTTCACTCATTCTGCAAGGTCTTAACTGCTTCAGATACCAGCACACATGGTGGTTTCTCTGTTCTCAGGAAACATGCCACAGAATGTCTTCCTGCTTTGGACATGTCCCAACCAACACCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGCAGACACCTGCTCACAACTGGATGGAGTACTTTTGTTACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGGGAACAATGGCGAATTACGTGTGGGAGTTAGGCGTCTTGCTCGCCAGCCAAGTAGCATGCCATCGTCTGTGATCTCCAGTCAGAGCATGCACCTAGGAGTCCTTGCAACTGCCTCTCATGCTGTTGCAACTCAGACACTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCATAAGCGTGAACAAGTTCTTGGAGGCTATAAACAATAAGTTCAGTGTTGGCATGAGGTTCAAGATGAGGTTTGAGGGGGATGCTGCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAGTGGAAGATATTTCTCCCCATTGGGTGAATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAACCTGCAGCTGTTACAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTGACTTCTACTCCTACTCCCCCAGTTCAACCTACAGTTGTAAAGACGAAAAGGCCTCGACCACCCAGTGAAATTCCAGATGTTGACACAACATCGGCTACCTCAGTTTTCTGGGATTCTGGGCTAACTCAGGCTGATAGGACACAACTCAGCGTTTTATCTGAAAGCAAAAGAAGTGATAGTACTGGTATGTGGCATCATAAGCAAATTGATATGAATAGTAAAAGTAACAGCAACACTGTTATATCGAGGAATCAGCCAGAAGGAAGTTGGCTATCTTCTCCCCATTCTAGTTGTCCTTCTCATGTATTTCCGGACACAACAGATGATAGCAAGAGTGTCTCAGCATGGCCTGTTTCAAAGCCTAACTCATCCAAACTGAACATCGATCATGTGCTTGATCAAGTTGAGAAGGAGAACAAAGTTGAGTCTGGTACAAGTTATCGATTGTTTGGAATTGAGCTTATCGATCATTCCAGAAACTCACCTGCTGTTGAGAAGGCGCCTTCACATGCTGTAAATTTACCCAGAGTTACCACTGAGGTCTGTGCAAGCACCTTGTCCAGAACTGATACTGGTCATAAGTCTGATGTCTCAAAGGCTTCTAAGGAGAGGAAACAAGAACAGCAGCAAATATCAACACAGGAGACTCAGAGCATGCATATTTGTGGCAGAAGTCGCACCAAGGGAGTTGCAGTGGGTCGTGCTGTGGATTTGACCATGTTGGATGGTTACAATCAACTTATAGATGAATTGGAGGAGATGTTTGACATAAAGGGACAACTTCGACACAAGAATATGTGGAAAATTGTCTTCACTGATAATGAAGGGGATGACATGCTTATGGGCGATCATCCATGGCCTGAATTTTGTAATGTGGTGAGAAAAATCTCCATTCTTTCCAGCCAGGATGTGAAGATGAGTTCAGGAAGCAAGCTACCAATCTCTTCAATGGAAGAAGGGACTGTAATAAGCTCAGACACAACCGAAACCTGA 2067 0.4523 MLNRGSNVSAEVGGSGESDDELYEQQWKACAGPLVDVPHVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSPDPCTAELPRPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRLARQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKFLEAINNKFSVGMRFKMRFEGDAAAETDKRFSGTIVGVEDISPHWVNSKWRSLKVQWDEPAAVTRPDRVSPWEIEPFVTSTPTPPVQPTVVKTKRPRPPSEIPDVDTTSATSVFWDSGLTQADRTQLSVLSESKRSDSTGMWHHKQIDMNSKSNSNTVISRNQPEGSWLSSPHSSCPSHVFPDTTDDSKSVSAWPVSKPNSSKLNIDHVLDQVEKENKVESGTSYRLFGIELIDHSRNSPAVEKAPSHAVNLPRVTTEVCASTLSRTDTGHKSDVSKASKERKQEQQQISTQETQSMHICGRSRTKGVAVGRAVDLTMLDGYNQLIDELEEMFDIKGQLRHKNMWKIVFTDNEGDDMLMGDHPWPEFCNVVRKISILSSQDVKMSSGSKLPISSMEEGTVISSDTTET 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi486g00012 688 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Sebi486g00012 688 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Sebi486g00012 688 MobiDBLite consensus disorder prediction 544 575 - -
Sebi486g00012 688 FunFam Auxin response factor 125 229 - -
Sebi486g00012 688 ProSiteProfiles PB1 domain profile. 578 659 IPR000270 GO:0005515
Sebi486g00012 688 FunFam Auxin response factor 288 361 - -
Sebi486g00012 688 Pfam AUX/IAA family 558 662 IPR033389 -
Sebi486g00012 688 MobiDBLite consensus disorder prediction 426 456 - -
Sebi486g00012 688 Gene3D - 288 361 - -
Sebi486g00012 688 CDD B3_DNA 125 227 IPR003340 GO:0003677
Sebi486g00012 688 MobiDBLite consensus disorder prediction 355 387 - -
Sebi486g00012 688 SMART B3_2 127 229 IPR003340 GO:0003677
Sebi486g00012 688 MobiDBLite consensus disorder prediction 667 688 - -
Sebi486g00012 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 664 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi486g00012 688 Gene3D - 574 665 - -
Sebi486g00012 688 MobiDBLite consensus disorder prediction 550 567 - -
Sebi486g00012 688 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Sebi486g00012 688 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi486g00012 688 SUPERFAMILY CAD & PB1 domains 584 655 - -
Sebi486g00012 688 Coils Coil 555 575 - -
Sebi486g00012 688 Gene3D - 124 228 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi486g00012 Sebi-Chr486 207738 211240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi486g00012 22 670 B3 DNA Binding Superfamily AT4G23980 57.382 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi486g00012 AUX_IAA 3.1e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi486g00012 K14486 - gmx:100803911 1124.38