Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi485g00013 ATGTCTGGTGGTTTGGACCTCGTCAAGCAGCTGTGTCCAGGGAGGCAAAATTGGAGGATCAAGGTTCGAGTGATTCGCCTATGGGACATGGCACCCATTGACCAACCATCCCTCCCTTTCTCCATTGATATGGTTCTCATGGACTCGGAGGGAAATAGGATTCAAGCTACTGTAAGGAAGCCGATGATACAAAAATTCAGAGGTGTTATGATGGAGGGGCAGACGTATCGCATAGCGTACTTTGGCATCATCAACAACACTGGATTATTTCGTGCAGCTAGGCATGCATACAAGCTTCTGTTCCATAGCAGAACAAGGGTCATCCCGTGTGAGACCATGTCAGTTCCTTTGTACAGTTTAGCATTATCTGATTCTCAGGAAGTGTATGAAACAGGAGGGAAGTCTGATCATTTAGTTGATGTCATGGGCTTATTGACTGCTGTATCCGCTGAGAGATTGTCTGCCAGGGATGGCCGAACAACAAGACTTATTGTGATGGAGTTGTCTGATGAGAAGGGGAAAGTTAGGTGCACCGTGTTCAGGCCATATGTTGACATGATCAAGGAGTACCTATCGAGGGGTGTTGACGAGATGCCAGTGGTCATAGCGCAATTTGTTCGTGTGAATACTTACAAGGGTGATGTTGTCCTCCAGAATGTGATGAATACAACTAGAGTGTTGTGGAATCCAGATATACCAGAGGCGATTGATTTCAAAAGCTGCATGGTGGCTCTCGGGGTGGACCCATCTTCCTCGATTGGTGTTATAGGGGAGGCACAGGGGGAGCTTTCCATGCAGGAAGAATTCACCAAATTGTTTCCTAGGAAGTCAATTAACGAGCTCCACTCTACTGAGGAGGAGGGAGTTTTCATCGTCCTAGCAAGTATTTCTGCTGTTCTTTTCCAGGATATGTGGTGGTACAATGCATGTCGTTGCATGAAGACTGTCTCAGATGTCGACGACAAGTATAAGTTAAAGGTCGAAGTGTTCGATGGCGTTGACACTGCCACTTTTATTTTATTTGATGCTGATGCTGAGAAGCTGCTTGGAAAGCCATGTTCTGTGTTGGTGGCTGATGTCGTGGACCCCAAGGCAGCAGAATATCCGGGTGATTTCAACGTTGTTGTTGGAATGGAGCTCTTATTCAAGGTGTCAAAGCTGGCCGACCATGCATTTAGTTTTGATGACACATTCAGGGTGAAAAAGGTATGCAATGATCCTGGTATAATTTCTCTGGTGAAAAAGACATACCCAGCAACGACGAGGGGTTATTGTGATGTCAGTGGTAGGGTTTGCTTGTGTGGCAAGGCTTCCATTGTTCGGACATCTTGGACGGAGAGAAACCACGGGAGAAGATTCCTCCAATGTCGTGATAGGATGAACAATGGCATACATGGTTGTAAATACTTTGACTGGGTTGATTCTCCCCTTGATCGCCTCGATGCAATCGGTGAATCTCATCACACAACAACCGTAGATGATCGGATAGCTCGTATTGAAAGGCAGCTACGTGCAACGGACGAAAAGATTAACGTTGCTGAGCAGTCCATGGCTGAGTTCATGAGGAGGGAACGATCACGGTTGTCATTCTGTTGGATTATGTGGGCTATTATGTGTTCAGTGAGATTGTGGTCTAAATGCGTTGCTCATCACGGTCTGGATCACCGGATGATGTGCAATTTCCCTGGGATTAATCCTCTGAATCCCCGAGCTTCGGCTGTTTCGAGAAGGAAGTTCTTTGCTGTTTTTCGACCCCGTGAGTCTCATATTCGGATTCCTCGCTGGTTTCATGAGATATGGCGGAATCATTTGGAGGACTTAGTTGTATGCAAAGACCCATCGGGAAATAGGTTTCCAGTTTATCTATGTTTTAGACGTGGGCGATTGTATTTCTGTCTTGGTGTTCAAAATATTCGTGATGCTTATGGTATCTCCACTTCCATGGTCATTTCATTCACCCTGGTGAACAGTCGCTACTTTTGTATCAGGGTGTTTGGATCGGATGCAAATGAGATAACCTATCCTGCACTTGGTGCCTAG 2040 0.4603 MSGGLDLVKQLCPGRQNWRIKVRVIRLWDMAPIDQPSLPFSIDMVLMDSEGNRIQATVRKPMIQKFRGVMMEGQTYRIAYFGIINNTGLFRAARHAYKLLFHSRTRVIPCETMSVPLYSLALSDSQEVYETGGKSDHLVDVMGLLTAVSAERLSARDGRTTRLIVMELSDEKGKVRCTVFRPYVDMIKEYLSRGVDEMPVVIAQFVRVNTYKGDVVLQNVMNTTRVLWNPDIPEAIDFKSCMVALGVDPSSSIGVIGEAQGELSMQEEFTKLFPRKSINELHSTEEEGVFIVLASISAVLFQDMWWYNACRCMKTVSDVDDKYKLKVEVFDGVDTATFILFDADAEKLLGKPCSVLVADVVDPKAAEYPGDFNVVVGMELLFKVSKLADHAFSFDDTFRVKKVCNDPGIISLVKKTYPATTRGYCDVSGRVCLCGKASIVRTSWTERNHGRRFLQCRDRMNNGIHGCKYFDWVDSPLDRLDAIGESHHTTTVDDRIARIERQLRATDEKINVAEQSMAEFMRRERSRLSFCWIMWAIMCSVRLWSKCVAHHGLDHRMMCNFPGINPLNPRASAVSRRKFFAVFRPRESHIRIPRWFHEIWRNHLEDLVVCKDPSGNRFPVYLCFRRGRLYFCLGVQNIRDAYGISTSMVISFTLVNSRYFCIRVFGSDANEITYPALGA 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi485g00013 679 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Sebi485g00013 679 Gene3D - 258 405 IPR012340 -
Sebi485g00013 679 Gene3D - 571 669 IPR015300 -
Sebi485g00013 679 Pfam GRF zinc finger 431 475 IPR010666 GO:0008270
Sebi485g00013 679 CDD RPA1_DBD_A_like 19 107 - -
Sebi485g00013 679 SUPERFAMILY DNA-binding pseudobarrel domain 577 668 IPR015300 -
Sebi485g00013 679 CDD RPA1_DBD_C 276 385 IPR047192 -
Sebi485g00013 679 SUPERFAMILY Nucleic acid-binding proteins 133 241 IPR012340 -
Sebi485g00013 679 Gene3D - 114 245 IPR012340 -
Sebi485g00013 679 SUPERFAMILY Nucleic acid-binding proteins 274 390 IPR012340 -
Sebi485g00013 679 Pfam Domain of unknown function DUF223 44 119 IPR003871 -
Sebi485g00013 679 CDD RPA1_DBD_B_like 140 240 - -
Sebi485g00013 679 ProSiteProfiles Zinc finger GRF-type profile. 432 476 IPR010666 GO:0008270
Sebi485g00013 679 Gene3D - 7 112 IPR012340 -
Sebi485g00013 679 Coils Coil 496 516 - -
Sebi485g00013 679 PANTHER OS03G0429900 PROTEIN 7 386 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi485g00013 Sebi-Chr485 221453 225864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi485g00013 11 373 Core DNA Replication Machinery Family AT5G08020 25.316 1.42e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi485g00013 - - lja:Lj6g3v0884310.1 382.489