Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi484g00037 ATGACTTTAGTTTCTGCTGCCTGTCATCCGATCAAAAGCTTGTGTGGATTAAGACAGAACTGGAGGTTGAAGGTGAAAGTTGTGAGGAAGTGGAATATGAGCTCTGTTGTGAGCCCGGATGATCCTTTTGCTTTGGAGATGCTTTTTGTTGATGAAGAAGGTGGGCGGATTGAGGCAACTGTGCAAAAGCATCTCATGCATAAGTTTACTAACAGTATTGTTGAAGGGCAAGTCTACAAGATTACAAGGTTTGGAATTTTGCGCAACGGTGGAAAGTTCCGAGCAAGTGGGCATGATTTCAAGATCATCTTCAATTCTAACACCCAAGTTATCGCGTGTCCCGGCATTGATATTCCATTCCTTGGGTTGGCCTTAACTAAGACTTCTGATATAAAAAAGACAAAAGGTTTCTCGAACTACCTCTTAGATTTTATGGGGATTGTGACGGCTATCTCAGAGGAGACAAAGCTGAACAAGGAAGGGAGGGTTACGCGTCTAATGTCCATAGAGTTGGTTGATGAAATGGGAGAGATTCGGTGTGCTATTTTCGGAAATATGGTGGACACTGTGAAGGGATATCTCACTGAGCCTCGCTGCGGACTTCCTGTGATGATCATTCAGCTGGCAAAGGTTAATGTCTATAAGGGCCAAGTTGGAATTCAAAATGTGATGAACGCGTCCAAAATCTGGTGGAATCCAGACATCCCTCAGGCTATGGAGTTCAAAAATGGGCTAGCAGTTCATGAGATTGAAAGTGATCTTGCTGTTTCACTCATACCCCAAAAGCCTCGCCCTGTCTCACTTAGAGAGGAGTTTTTGGAAATGTATCCGAAGAAGAGTGTTGGGGAGTTGAATCAACTGTTGGAGCAAGGGTCTTTCATTATTTTGGGAACAATAGCTGAAATCTTGGATGATAGTTTGTGGTGGTACATGGCATGTACATGTATGAAGTCTATTACCTATGAACCGGGCTTCCCTTTTTGCACTGGTTGTAACCTTCCTGTGTACGACATAACACCTAGGTACAAAATCAAGGTGGCTGTGACGGATGGAGAAGATATCACACACCTTATAATGTTTGATTCAGAATGTTGCTTTCTGCTAGATAAGTCTTGCTATGACCTGTCGGAGGAGGGAAAGGTTAATGGCTGCTCTGGTTATCCACAAGAAATAATGGATTTCGTGGGGAAGGAACTGCTTTACCGAGTTGAGATAAACGAAGATGCCATGCTTGCCTATGATGGGTGCATAAAGGTGAAGAAGTTGTGCTCTGACTCATCCATTATCAGTGAGTACAAAGAAAGAGTCGATGATGAGACTCCACTTAAGCTGAAGTACGCACCATTGTTTACAAAGATTGAAGATGCTCCAGGAAATAGCTGTGTGCTTGAGCTGTCTCCTCAGAGTAATTCTCTTCTAACTGATGCTGAATTCACACCAACCTCGTGTGGGGAATCATCTTCTGCTGATGAGTACAAAAAGGATTTGGGCAAGAGGCCACTTCAGGAGCCTCCCGAGTGTCCACCAATCAATTTGAAGAGGATCAAAGTGCAAGGAATTAAGATTGAGGACAACTGA 1578 0.4354 MTLVSAACHPIKSLCGLRQNWRLKVKVVRKWNMSSVVSPDDPFALEMLFVDEEGGRIEATVQKHLMHKFTNSIVEGQVYKITRFGILRNGGKFRASGHDFKIIFNSNTQVIACPGIDIPFLGLALTKTSDIKKTKGFSNYLLDFMGIVTAISEETKLNKEGRVTRLMSIELVDEMGEIRCAIFGNMVDTVKGYLTEPRCGLPVMIIQLAKVNVYKGQVGIQNVMNASKIWWNPDIPQAMEFKNGLAVHEIESDLAVSLIPQKPRPVSLREEFLEMYPKKSVGELNQLLEQGSFIILGTIAEILDDSLWWYMACTCMKSITYEPGFPFCTGCNLPVYDITPRYKIKVAVTDGEDITHLIMFDSECCFLLDKSCYDLSEEGKVNGCSGYPQEIMDFVGKELLYRVEINEDAMLAYDGCIKVKKLCSDSSIISEYKERVDDETPLKLKYAPLFTKIEDAPGNSCVLELSPQSNSLLTDAEFTPTSCGESSSADEYKKDLGKRPLQEPPECPPINLKRIKVQGIKIEDN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi484g00037 525 SUPERFAMILY Nucleic acid-binding proteins 125 246 IPR012340 -
Sebi484g00037 525 Gene3D - 6 113 IPR012340 -
Sebi484g00037 525 SUPERFAMILY Nucleic acid-binding proteins 290 420 IPR012340 -
Sebi484g00037 525 Gene3D - 116 251 IPR012340 -
Sebi484g00037 525 MobiDBLite consensus disorder prediction 476 508 - -
Sebi484g00037 525 SUPERFAMILY Nucleic acid-binding proteins 9 117 IPR012340 -
Sebi484g00037 525 CDD RPA1_DBD_B_like 143 242 - -
Sebi484g00037 525 Gene3D - 274 422 IPR012340 -
Sebi484g00037 525 Pfam Domain of unknown function DUF223 47 117 IPR003871 -
Sebi484g00037 525 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi484g00037 Sebi-Chr484 531569 534075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi484g00037 8 407 Core DNA Replication Machinery Family AT5G08020 23.419 2.24e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi484g00037 - - lja:Lj6g3v0884310.1 369.777