Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi484g00015 ATGGAAAGGCACAAATGCAAGCTATGTTCAAGGACATTTGCCAATGGCAGAGCCCTTGGTGGTCACATGAAGGCTCACCTTGCCACCCTTCCCCTGCCTCCAAAGCCTGAACCTTTCAATGAGCTTGCAGATCCTGAATTTTCTTTAGCACCTGATACTGGGTTTGTGGTCCAAGACAGAGAGAGTGAGACTGAGTCAAAGAACCCAACTCGCCAACGATCCAAGAGGAACAGAAAGTCTAGCTTAATGGGTAGCCAGAACCAGAATTTGGAATCCAAGAAACCCAAGTTGAGTTTCATGGTGTCAACACCACCACCACCATCCACAGAGCCAGAGCCTTTGAGTTCTGTTTCTGACACTTCCCCTGAAGAAGATGTTGCCATGTGCCTCATGATGCTGTCAAGGGACAAGTGGAGGAGGAAGAACAATGGTGTGGAAGTGGAACAACAAGGTCAAGCACTTGGTGGACACAAGAGATCTCACCTCATTCCTTCTTCATCATCAATAGCTAATGTTGATTCTGTTAGATTGAAAGAAAGCTTCATAGATCTCAACTTGCCAGCTCCACTTGAAGAAGATGACCTCAGTGTTGTTTCTGATGCGTAA 606 0.4637 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPEPFNELADPEFSLAPDTGFVVQDRESETESKNPTRQRSKRNRKSSLMGSQNQNLESKKPKLSFMVSTPPPPSTEPEPLSSVSDTSPEEDVAMCLMMLSRDKWRRKNNGVEVEQQGQALGGHKRSHLIPSSSSIANVDSVRLKESFIDLNLPAPLEEDDLSVVSDA 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi484g00015 201 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 150 201 IPR044303 GO:0006355
Sebi484g00015 201 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Sebi484g00015 201 MobiDBLite consensus disorder prediction 30 122 - -
Sebi484g00015 201 Pfam C2H2-type zinc finger 151 162 - -
Sebi484g00015 201 Pfam C2H2-type zinc finger 3 28 - -
Sebi484g00015 201 MobiDBLite consensus disorder prediction 79 96 - -
Sebi484g00015 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Sebi484g00015 201 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi484g00015 Sebi-Chr484 273081 274023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi484g00015 2 196 C2H2 Transcription Factor Family AT1G02030 37.455 1.83e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi484g00015 zf-C2H2_6 1e-07 CL0361