Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi482g00049 CAAGCTCTAACTCTTGTATTTGTTGAAACTAAGAGAGGAGCTGATGCTTTAGAAGACTGGCTGTCGAGAAATGGGTTTCCGGCTATTGCAATACATGGTGATAAAGTTCAAATGGAGCGGGAACGAGCTTTAAGATCTTTCAAACGTGGTTTTACTCCGATTTTGGTAGCAACTGATGTTGCTTCCCGTGGTTTAGATATACCACATGTGGCTCATGTTATCAACTTTGACTTGCCTAGAGACATAGATGACTACGTACATAGGATTGGCAGAACAGGACGTGCTGGTAAATCTGGATTAGCTACTGCCTTCTTTAGCAACAAGAACATCCCTATTGCAAAAGCCCTTGTTGGACTTTTGCAGGAAGCTAAACAGGAAGTTCCACATTGGCTCTGCAAATACGCTGAGTGTTCATCATCTGGTGGTCGTAGTCATGGAGCTCAACGGTATGGCAGAGGCAATTATGGTGGCCGTGATTTCCGAAATCCCATAGAACCTGAGGTGGAGAATCGGAACTACAATGGCCGTGATTTCCGAAATTCCATTGAACCTGAGGTGGAGGATCGCAACTACAATACGTATGGCAATGCAGATCATGCTGTGGAAAACTACAATACATATGGCAATGCTGACCATGCTTTGGACTCTTCCCCTTACATTGACATGAAAAAATCTAATAGTGATTCCTCTTTTGACTTCAGGAACACAGTTTATACTGATGCTAATGCTGATTTGTATGAAGGTGGGAACGATGAAAATGGGCCATGTGGTTATAAATCTGTCGTTGCCAGTGGATGGGATTAG 804 0.4328 QALTLVFVETKRGADALEDWLSRNGFPAIAIHGDKVQMERERALRSFKRGFTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSNKNIPIAKALVGLLQEAKQEVPHWLCKYAECSSSGGRSHGAQRYGRGNYGGRDFRNPIEPEVENRNYNGRDFRNSIEPEVEDRNYNTYGNADHAVENYNTYGNADHALDSSPYIDMKKSNSDSSFDFRNTVYTDANADLYEGGNDENGPCGYKSVVASGWD 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi482g00049 267 Gene3D - 1 138 IPR027417 -
Sebi482g00049 267 FunFam ATP-dependent RNA helicase RhlB 1 139 - -
Sebi482g00049 267 MobiDBLite consensus disorder prediction 162 182 - -
Sebi482g00049 267 MobiDBLite consensus disorder prediction 139 182 - -
Sebi482g00049 267 Pfam Helicase conserved C-terminal domain 4 96 IPR001650 -
Sebi482g00049 267 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 135 IPR001650 -
Sebi482g00049 267 CDD SF2_C_DEAD 4 105 - -
Sebi482g00049 267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 161 IPR027417 -
Sebi482g00049 267 SMART helicmild6 15 96 IPR001650 -
Sebi482g00049 267 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 4 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi482g00049 Sebi-Chr482 704541 705654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi482g00049 5 114 Eukaryotic Initiation Factors Gene Family AT3G19760 39.091 2.19e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi482g00049 K11594 - gmx:100817549 321.627