LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi482g00048	ATGGCATGGTCCGAAAATGCTGCTTCCCATTTCCCTCAAAAGCTACCTCCCCGCACCTCTCGCCCCCGTTACGTCCCTCCACATCGCGCTAACGACGCCGTTTCACATTACAACAATCCAACTTCCTTTCCTTTCTCCGACGATGGCCTTAACCGTTCCGGTGACAGGCCACGTGGCCGTGGCGGTTCCCGTGGGGGCCGCCGAGGAGGTCGCCGGTATACTCGCACCGAAGAACAGCCTCGTGGCCGCGAGACTTTTTACCGGGACGATCGGTTCCCCTTCGAGGAAGCAGAAAACGCCGGCGTTACGAATTTTGATGCGTACGAATCGGTGCCGGTGGAGGCGAGCGGCGAGAATGTTCCACGGCCGGTGAATGCCTTCGCGGAAACTGACCTAGATGATGATTTGAAGAAGAACATCGAGCGATGCAAGTACGTGAAACCCACACCTGTTCAACGTCACGCCATACCTATTGCCGTTGCGGGTCGCGACTTGATGGCGTGTGCGCAGACCGGGTCGGGTAAAACGGCAGCGTTTTGTTTTCCTATTATATCTGGGATTCTGAAGGATCGTTCTGGTTCCACTAACGGGTTTTCTTCCATCCCTCGTAACGCCATTATTGCATATCCCACTGCTCTTATACTGTCCCCTACTAGGGAGTTATCATGCCAGATACATGCTGAAGCGAACAGGTTTGCATATCAAACAGGAGTGAAGATTGTAGTTGCTTATGGTGGAGCTTCCATTGGTCAGCAGCTGCGGAATTTGGAGAAAGGGGTTGACATATTGGTTGCAACTCCTGGGCGATTGGTGGATATGATTGAGAGAGAAAGGGTTTCTTTAACGAGGATAAAATATCTTGCTTTGGATGAAGCAGACCGTATGTTAGACATGGGTTTTGAGCATCAAATACGCAAGATTGTGGAGCAGATGCACATGCCCCCACCTGGTTCTAGACAGACAATGCTCTTTAGTGCTACATTCCCTGATGATATACAGAAGCTGGCGTCTGACTTTCTATCAAACTACATTTTTCTGGCTGTTGGAAGGGTTGGTTCAAGCACTGATCTGATTGCACAAAGATTTGAACTTGTACAGGATCAGGATACAGATAAAAGGAATCATCTTGTGGATCTTCTTTGTCGTCAAAGGGCACATGGAGCCAATGGGAAG	1173	0.5021	MAWSENAASHFPQKLPPRTSRPRYVPPHRANDAVSHYNNPTSFPFSDDGLNRSGDRPRGRGGSRGGRRGGRRYTRTEEQPRGRETFYRDDRFPFEEAENAGVTNFDAYESVPVEASGENVPRPVNAFAETDLDDDLKKNIERCKYVKPTPVQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGILKDRSGSTNGFSSIPRNAIIAYPTALILSPTRELSCQIHAEANRFAYQTGVKIVVAYGGASIGQQLRNLEKGVDILVATPGRLVDMIERERVSLTRIKYLALDEADRMLDMGFEHQIRKIVEQMHMPPPGSRQTMLFSATFPDDIQKLASDFLSNYIFLAVGRVGSSTDLIAQRFELVQDQDTDKRNHLVDLLCRQRAHGANGK	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi482g00048	391	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	108	348	IPR027417	-
	Sebi482g00048	391	SMART	ultradead3	144	361	IPR014001	-
	Sebi482g00048	391	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	95	380	-	-
	Sebi482g00048	391	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	156	346	IPR014001	-
	Sebi482g00048	391	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	125	153	IPR014014	GO:0003724
	Sebi482g00048	391	MobiDBLite	consensus disorder prediction	1	82	-	-
	Sebi482g00048	391	Pfam	DEAD/DEAH box helicase	149	335	IPR011545	GO:0003676\|GO:0005524
	Sebi482g00048	391	Gene3D	-	88	349	IPR027417	-
	Sebi482g00048	391	MobiDBLite	consensus disorder prediction	34	48	-	-
	Sebi482g00048	391	FunFam	Probable ATP-dependent RNA helicase DDX4	89	348	-	-
	Sebi482g00048	391	CDD	DEADc_DDX3_DDX4	127	352	IPR044763	GO:0003724\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi482g00048	Sebi-Chr482	702895	704423	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi482g00048	123	379	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.518	7.33e-33	125