LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi482g00028	ATGAACAACAATTATAGTGATAGAGGCAATGATAGTTCTGATGAAAGTCATAGTGAAGATAACAATGATGTGGGTAATCAGAATGAGGCAGTGGACGAAGATTTAACATATGAACAGTATAAAAGTATAATAGACCTAACTGCGAATGACGTTCGAGGTATGGAGTTTGGTAGTGACGAGCATGCATGTAAATTTTATGATTCATATGCTAGGTGTCATGGCTTTGTTGCAAGAAAAGATGATATAAAACGTGATGCGAAAGACAATATTATAATGCGTCAATTGGTTTGCAACAAAGAGGGGTTGAGAAATAAAAAGCACTTTATAAGGTTGGATAGAAAGAGACCTCATAGGCCAATCACTCGTACTAGTTGTCAAGCTAAGCTTAGAGTACACTTTGATTACAAGAGATCAAAATGGACAGTCTTGTCCTTTGTGGAGACTCATAATCATTATTTATGTCCACCAAAATATAGACACTTAATCCCTGCACATCGCAAGATGGGTGATACAGATAAAGCTCAAGCGGAAAGTTTGCATTCCTATGGAGTTAGGACTTGTCACATTATGGGATATATGTTGGCTCAGAAAGGTGGGTATAGTGCTTTAGGGTTTACCAAAAAGGATATGTACAATTATTTTAGTGAGAAAAACCGTGAGAAGATCAAAGATGGGGATGCATGCATTGCATTAAGTTATTTACAAGGCAAGGCAGATAATAATGGATTGATGCATTCATCATATTCATTTACAAGTGATGGGGATTTCAAGACTGCAATGTATGCTAATTTTACACCAGAAAAATTTGAAAATTTTTGGCAGCAATTGATTTTGAAACACGGGCTTGTAGAAAACAAGTGGGTTTCTAAAACCTATGAGAACAAGTATATGTGGGCTAGTGCATACTTGCGTGATAAGTTCTTTGGTCGTATAAGGACAACTTCACAATGTGAAGCCATTAATTCTCTTGTCAAGTCATATGCTAATAACAAATGTAGCATTATTGACTTCATGCATAAATTTGAGCAAGTGGTGAGGGAATATAGAAACAATGAGCTCATGGCAGATTTTAAGTGTTTCTGGTCAGAACCTGTGCTAACCACTTCTCTTTACAAGATTGAGCGTGATGCTTCAAAAATTTTCACCCAAGAGATTTTTAAGGATGTTAAATCTGAAATTGAAGCTGCTGGTGCCTTGAATGTTATTGAACGTGTGATAAATGGTGAGAAATTAATATTGAAGATGAACAAATATTGTGATATTGGAAGTGAATTTGTTGTTGATTATGATACTGTGAACTGTAATTTTTTCTGTGAATGCAAACTATTTGAATCTCGTGGCATTCCATGTGCTCATATTATATGTGCCATGAAAAATGAGCACATAGACTCCATTCCTAGCAGTTTGATATGCAAACGGTGGACAAAAACTGCGAAGAGTGATATTATTTCTGCAAGTCGATTGGATGATTTAGATTCTGATGTCATGTCTGGGGCCCGTGTTGGGGCTGCAGCTGCTGCTTGTAATAGATTATGCAGTATTGCTAGAGAGAAGAATGCATGTTTCAATGATATTTTAAATGATATCTTTAAGCTGCTTAATAAGTATGAGAATCAAGGGGATCCAAACAACACAGTTAGGTCATCTTTTAAGGATGTGGGTGATCCATATTTAGTGAAAACAAAAGGTGCTCCATCCAAGAAAAAGTACGGAAGGAAGAGGAGATGTTCAAATTGTAGTAGACCTGGACACATAGCTAGGAAATGTCCTAGGCTCCTTTCCACGGATGATCAAGTTCCTATGGATGGTGATTCTTCACATTCAGATGGTGATGGTTTCACAATAGGAGAAGAAAATGATAAAGAAGGAAATCCCGTTGATCAATGTGATGACCAGCAAATTGGGTCTAAAAATCAGTCAAGAATGAGGAAAGATAATAATGTAAAAGGGAAAGGTACTGGTTCTTTCAAAATGAAGGAGAAAACGGTAAATCGGTCAACACATAATTCAGTGAAGCAGCCTAAAATTGAACCTATGGTTTCTTCAAGTGATGCTAATGCTGACAATCCCCAACACCAAAATTCAAACCCTGTTTATGCAACAACCAGCGAAGGAGTTAATATATCACCTCATCATGGTGAGGGGGACCCTATAATTCCATTGGGTTCTTTAAATGGAGTTAATACCCTTTATCCCCAAAGGGTGTGTGTGTTACCCCAACAGCAAAACTTTACAAATGTTTATGGACCAATAAGCCAGGGAGCTAATATCTTACCTCATCACGATGGAGTTTCTATTAACCCTCAAGTTCCCCAAGTTGCATTTTTTCCTCAAAGGCCTCAGAATATAGGTATGTCTTGGAATGAGTTGTTGGAAGAGGTCACTAAAAATGGAGGTGTTAAGCATGGCAATCCATCATGA	2421	0.373	MNNNYSDRGNDSSDESHSEDNNDVGNQNEAVDEDLTYEQYKSIIDLTANDVRGMEFGSDEHACKFYDSYARCHGFVARKDDIKRDAKDNIIMRQLVCNKEGLRNKKHFIRLDRKRPHRPITRTSCQAKLRVHFDYKRSKWTVLSFVETHNHYLCPPKYRHLIPAHRKMGDTDKAQAESLHSYGVRTCHIMGYMLAQKGGYSALGFTKKDMYNYFSEKNREKIKDGDACIALSYLQGKADNNGLMHSSYSFTSDGDFKTAMYANFTPEKFENFWQQLILKHGLVENKWVSKTYENKYMWASAYLRDKFFGRIRTTSQCEAINSLVKSYANNKCSIIDFMHKFEQVVREYRNNELMADFKCFWSEPVLTTSLYKIERDASKIFTQEIFKDVKSEIEAAGALNVIERVINGEKLILKMNKYCDIGSEFVVDYDTVNCNFFCECKLFESRGIPCAHIICAMKNEHIDSIPSSLICKRWTKTAKSDIISASRLDDLDSDVMSGARVGAAAAACNRLCSIAREKNACFNDILNDIFKLLNKYENQGDPNNTVRSSFKDVGDPYLVKTKGAPSKKKYGRKRRCSNCSRPGHIARKCPRLLSTDDQVPMDGDSSHSDGDGFTIGEENDKEGNPVDQCDDQQIGSKNQSRMRKDNNVKGKGTGSFKMKEKTVNRSTHNSVKQPKIEPMVSSSDANADNPQHQNSNPVYATTSEGVNISPHHGEGDPIIPLGSLNGVNTLYPQRVCVLPQQQNFTNVYGPISQGANILPHHDGVSINPQVPQVAFFPQRPQNIGMSWNELLEEVTKNGGVKHGNPS	806

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi482g00028	806	SMART	c2hcfinal6	575	591	IPR001878	GO:0003676\|GO:0008270
	Sebi482g00028	806	MobiDBLite	consensus disorder prediction	557	697	-	-
	Sebi482g00028	806	MobiDBLite	consensus disorder prediction	667	697	-	-
	Sebi482g00028	806	SUPERFAMILY	Retrovirus zinc finger-like domains	566	595	IPR036875	GO:0003676\|GO:0008270
	Sebi482g00028	806	MobiDBLite	consensus disorder prediction	1	32	-	-
	Sebi482g00028	806	SMART	26again6	436	463	IPR006564	GO:0008270
	Sebi482g00028	806	PANTHER	OS01G0519700 PROTEIN	51	237	-	-
	Sebi482g00028	806	MobiDBLite	consensus disorder prediction	611	627	-	-
	Sebi482g00028	806	ProSiteProfiles	Zinc finger CCHC-type profile.	574	591	IPR001878	GO:0003676\|GO:0008270
	Sebi482g00028	806	Pfam	FAR1 DNA-binding domain	64	154	IPR004330	-
	Sebi482g00028	806	MobiDBLite	consensus disorder prediction	642	666	-	-
	Sebi482g00028	806	Gene3D	-	559	629	-	-
	Sebi482g00028	806	Pfam	Zinc knuckle	575	590	IPR001878	GO:0003676\|GO:0008270
	Sebi482g00028	806	MobiDBLite	consensus disorder prediction	565	581	-	-
	Sebi482g00028	806	ProSiteProfiles	Zinc finger SWIM-type profile.	425	461	IPR007527	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi482g00028	Sebi-Chr482	511787	515101	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Sebi482g00028		FAR1	3.7e-20	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi482g00028	-		-	ccaj:109792835	416.387