Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi482g00016 ATGGCTATGTGCGGAGAAGAAGAGATTGAGTTGTCAAGGGATGGCAGTCACTACAGTCTCTCTACCGGGATTTTGCCTTCTCTCGGTGCCAGAAGTAACCGCAGAGTTAAACTCAAGCCCCTTATTATATCTCCCTATGACCGCCGTTACAGGATATGGGAAACTTTCCTTGTTACTCTGGTGGTCTATACTGCTTGGGTATCTCCCTTTGAATTTGGGTTCCTTAGGAAACCTCAAGCACCCCTTTCTATTACAGATAATATTGTCAATGGATTCTTTGCTGTGGATATAGTTCTCACCTTCTTTGTGGCTTACATCGACAAAGCTACCTATTTGTTTGTGGATAGCCAAAAAAAGATTGCTTGGAAATATGCAAGAACTTGGTTGGCTTTTGATGTTATCTCTATCATTCCTTCAGAGCTTGTTGCAAAGCTATCACCTTCTCCTATCCAAACTTATGGGCTATTCAATATGCTTCGCCTTTGGCGTCTTCGAAGAGTTAGTGCTTTGTTTTCAAGGCTTGAGAAGGACAGAAACTTTAACTACTTTTGGGTTCGGTGTGCCAAGCTTATCTGTGTTACCCTTTTTGCTGTTCATTGTGCTGGATGCTTTTATTATCTCCTTGCTGCACGTTATCATGATCCCAAAAACACATGGATTGGGCAATCAATGGATAATTTCCTAGAGCAGAGCTTGTGGACAAGATATGTGACATCTATTTACTGGTCTATTACTACTTTAACAACGGTTGGTTATGGGGATCTGCATCCAGTGAATCAAAGGGAGATGGTCTTTGACATCTTTTACATGCTCTTCAATCTGGGCTTAACAGCATATCTGATTGGTAATATGACGAACTTAGTTGTCCATGGCACAAGTCGAACTAGAAAATTTAGGGATACCATACAAGCTGCATCAAGTTTTGCTCAAAGGAATCAATTGCCTCATCGTCTGCAAGATCAAATGCTTGCTCACTTGTGTTTGAAGTTTAGAACAGATTCTGAAGGGTTGCAGCAGCAAGAGACACTTGAATCTCTTCCTAAAGCCATCAGATCAAGCATTTCACATTACCTTTTCTATTCTCTGATGGATAAGGTCTATTTGTTTCGTGGAGTTTCAAATGACTTGCTCTTTCAATTGGTGTCAGAGATGAAACCCGAGTATTTTCCACCCAAAGAAGATGTTATCTTGCAGAATGAAGCCCCCACTGATTTTTATATTCTAGTCACCGGTGCTGTGGACCTACTAGTTCTTAAAAATGGGGTTGAACAGGTTGTTGGAGAGGCAAAAACTGGAGATCTTTGTGGTGAGATTGGTGTGCTCTGCTATAAGCCACAGCATTTCACAGTTAGAACAAAACGATTAAGTCAGCTGCTGAGGCTGAACCGTACTACATTCTTGAATATTGTTCAGGCCAATGTTGGGGACGGAACCATAATCATGAATAATCTCCTTCAGCATTTGAAAGAGCTGAATGATCCAATAATGGAGGGAGTTTTGGTGGAGACTGAGAACATGTTAGCTCGTGGTAGGATGGACCTACCAGTAAGTCTATGCTTTGCAGCAGTAAGAGGGGATGATTTGCTGTTACATCAATTGCTAAAACGGGGCCTGGATCCAAATGAATCCGACAACAATGGAAGGACAGCCTTGCATATAGCAGCATCCAAAGGAAAAGAGAACTGTGTTTTGCTTCTGCTAGATTATGGGGCAGATCCGAATACTAGAGATTCCGATGGAAATGTACCACTATGGGAAGCTATAGTTGGTGGATATGAATCAGTGACCAAGCTGTTGGTAGAAAATGGCGCTACCTTGCAATGTGGTGATGTGGGTCAATTTGCATGCACTGCTGCTGAACAGAACAATCTCAACTTGCTCAAGGACATGGTACGTCATGGAGGAGATATCACACTATCAAACAGCAACGTTGGGACCACAGCTCTGCACGTTGCAGTCTCCGAAGACAATGTTGAGATTGTCAAATTCCTTTTAGATCACGGGGCTAACATTGACCAACCAGACAAGCATGGTTGGACCCCAAGAGATCTAGCAGATCAACAAGGACATCAAGATATTAAGGCCATTTTTGAGTCCACTGGTGAGCCTAAGGCTCAGTCTTTTGTTGCTATTCCTGAGAGGCAGCAGAGTAAGATCAGGTTCCTAGGCAGATTCACAAGTGAGCCAACAATGCCTTCACCCAATGATGGCTCATTTCATGGAACAGATGGCTCTTGGAGCCAAAGCCGTCCAAGGCGTAGGAGTAATAACTACCACAACTCACTCTTTGGGATAATGACTGCAGCACACAAAGGGGATAATGACCTGCTTTTCTCTGTTAACATGAATAACATTGCAAAGAATGGTATGAAGAGTAGAGTTCTCCCAACTAGAGTAACAATTAGTTGCCCTGAAAAGGGTGAGGTTTCTGGGAAGCTTGTATTACTACCTGGAAGCTTTAAAGAGCTACTTGAGATTGGAGCTAAAAAATTTGGTGTCTTTCCTGCTAAGGTTGTGTGCAAGGATGGAGCTGAAATTGATGATATAGAGGTGATTAGAGATGGTGACCATCTTGTTTTTGTCAGTGCTGGTGGGGTGCTAGAATCCAATTGTCCACAACACACCAATGGTGTACTTCCATAG 2643 0.4264 MAMCGEEEIELSRDGSHYSLSTGILPSLGARSNRRVKLKPLIISPYDRRYRIWETFLVTLVVYTAWVSPFEFGFLRKPQAPLSITDNIVNGFFAVDIVLTFFVAYIDKATYLFVDSQKKIAWKYARTWLAFDVISIIPSELVAKLSPSPIQTYGLFNMLRLWRLRRVSALFSRLEKDRNFNYFWVRCAKLICVTLFAVHCAGCFYYLLAARYHDPKNTWIGQSMDNFLEQSLWTRYVTSIYWSITTLTTVGYGDLHPVNQREMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPHRLQDQMLAHLCLKFRTDSEGLQQQETLESLPKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGDLCGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVETENMLARGRMDLPVSLCFAAVRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGKENCVLLLLDYGADPNTRDSDGNVPLWEAIVGGYESVTKLLVENGATLQCGDVGQFACTAAEQNNLNLLKDMVRHGGDITLSNSNVGTTALHVAVSEDNVEIVKFLLDHGANIDQPDKHGWTPRDLADQQGHQDIKAIFESTGEPKAQSFVAIPERQQSKIRFLGRFTSEPTMPSPNDGSFHGTDGSWSQSRPRRRSNNYHNSLFGIMTAAHKGDNDLLFSVNMNNIAKNGMKSRVLPTRVTISCPEKGEVSGKLVLLPGSFKELLEIGAKKFGVFPAKVVCKDGAEIDDIEVIRDGDHLVFVSAGGVLESNCPQHTNGVLP 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi482g00016 880 Pfam Ion transport protein 51 295 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi482g00016 880 MobiDBLite consensus disorder prediction 725 753 - -
Sebi482g00016 880 Gene3D - 52 289 - -
Sebi482g00016 880 ProSiteProfiles cAMP/cGMP binding motif profile. 368 470 IPR000595 -
Sebi482g00016 880 FunFam Potassium channel SKOR 51 289 - -
Sebi482g00016 880 ProSiteProfiles Ankyrin repeat profile. 546 578 IPR002110 GO:0005515
Sebi482g00016 880 Pfam Ankyrin repeats (many copies) 631 685 IPR002110 GO:0005515
Sebi482g00016 880 FunFam Potassium channel KAT2 356 492 - -
Sebi482g00016 880 CDD CAP_ED 368 473 IPR000595 -
Sebi482g00016 880 Gene3D - 514 698 IPR036770 -
Sebi482g00016 880 SMART cnmp_10 368 485 IPR000595 -
Sebi482g00016 880 Pfam Ankyrin repeats (3 copies) 519 607 IPR002110 GO:0005515
Sebi482g00016 880 PANTHER POTASSIUM CHANNEL AKT1 16 862 IPR045319 GO:0005249|GO:0006813
Sebi482g00016 880 SUPERFAMILY Voltage-gated potassium channels 45 289 - -
Sebi482g00016 880 SUPERFAMILY cAMP-binding domain-like 293 488 IPR018490 -
Sebi482g00016 880 ProSiteProfiles Ankyrin repeat region circular profile. 644 676 - -
Sebi482g00016 880 ProSiteProfiles KHA domain profile. 798 878 IPR021789 -
Sebi482g00016 880 PRINTS Ankyrin repeat signature 547 562 IPR002110 GO:0005515
Sebi482g00016 880 PRINTS Ankyrin repeat signature 660 674 IPR002110 GO:0005515
Sebi482g00016 880 ProSiteProfiles Ankyrin repeat profile. 644 676 IPR002110 GO:0005515
Sebi482g00016 880 Pfam Cyclic nucleotide-binding domain 387 472 IPR000595 -
Sebi482g00016 880 ProSiteProfiles Ankyrin repeat region circular profile. 546 577 - -
Sebi482g00016 880 SMART ANK_2a 579 608 IPR002110 GO:0005515
Sebi482g00016 880 SMART ANK_2a 610 639 IPR002110 GO:0005515
Sebi482g00016 880 SMART ANK_2a 546 575 IPR002110 GO:0005515
Sebi482g00016 880 SMART ANK_2a 513 542 IPR002110 GO:0005515
Sebi482g00016 880 SMART ANK_2a 644 673 IPR002110 GO:0005515
Sebi482g00016 880 Pfam KHA, dimerisation domain of potassium ion channel 798 860 IPR021789 -
Sebi482g00016 880 SUPERFAMILY Ankyrin repeat 517 700 IPR036770 -
Sebi482g00016 880 PRINTS EAG/ELK/ERG potassium channel family signature 86 96 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi482g00016 880 PRINTS EAG/ELK/ERG potassium channel family signature 262 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi482g00016 880 PRINTS EAG/ELK/ERG potassium channel family signature 236 253 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi482g00016 880 PRINTS EAG/ELK/ERG potassium channel family signature 280 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi482g00016 880 PRINTS EAG/ELK/ERG potassium channel family signature 97 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi482g00016 880 PRINTS EAG/ELK/ERG potassium channel family signature 63 70 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi482g00016 880 Gene3D Jelly Rolls 332 493 IPR014710 -
Sebi482g00016 880 ProSiteProfiles Ankyrin repeat profile. 579 611 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi482g00016 Sebi-Chr482 319236 325833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi482g00016 11 860 Ion Channels AT2G25600 64.252 0.0 1112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi482g00016 K21867 - gmx:100819491 1539.24