Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi482g00003 ATGGCGTTGGTTATTCTCGTTTTCTTCCATTTGTTTCTTCAACTGAGTGTCCGAGTCAACTCGGACCTAACTCAGGACAAGCAAGCCCTCCTTGCTTTCATTTCCCAAACCCCACACTCCAACCGTGTCCAATGGAACGCTTCCGATTCCGTCTGCAACTGGGTCGGTGTCCAATGTGACGATTCACGTTCCTATGTCTCTTCCCTCCGTTTACCCGCTGTTGGTCTCGTGGGTCGGGTCCCACCCGGAACAATCGGAAAACTCACCCAGCTTCGTGTCCTCAGTCTCCGTTCCAATGGTCTCACCGGTGAGATCCCCTCCGATTTCTCCAATTTGACCTTCCTTCGCAGCCTCTACCTCCAAAAGAATCAGCTCTCCGGTGAGTTCCCACCTAGTCTAACTCGCCTGACTCGTTTGACTCGCTTGGATCTCTCCTCCAACAACTTCACCGGTTCAATCCCTTTCTCCATCAACAACTTGGTCCACCTCAGCGGTCTCTTCTTGGAGAACAACGCCTTCTCCGGTAGCCTCCCAAGCGTTACAGCTAAATTGGTTGGTTTCAACGTTTCCAATAATCACCTCAACGGTTCCATCCCCGAGACACTCTCCAAGTTCCCCGAATCCTCATTCGCCGGAAACTTAGATCTCTGCGGACCGCCGTTGAAATCGTGCAATCCTTTCTTCCCGGCGCCGGCGCCCTCACCGTCGTCCACTTCACCGGCGGGTGCGTCTCACAAGAAGTCCAATAAGCTCTCCACGGGTGCCATTATCGGAATCGTCGTGGGTTCTGTTGTGGGTTTGTTGTTACTGCTGCTTCTCCTGTTCCTCTGCCTCCGGAAGCGGCAGGGGCGGCAACCGGCGAAGCCTCCGAAGCCGGTGGCGACGGCGCGTGCAGCGCCGGCAGAGGCGGGAACGTCGTCGTCGAAGGACGATATCACGGGTGGGTCAGCGGAGGCAGAGAGGAACAAGCTGGTGTTCTTCGAAGGGGGAATATACAGCTTCGATTTGGAGGATTTGCTTCGTGCTTCGGCGGAGGTTTTGGGAAAAGGAAGTGTAGGGACTTCGTATAAGGCGGTGTTGGAAGAAGGTACGACGGTGGTGGTGAAGAGGTTGAAGGATGTTGTGGTTACGAAGAAAGAGTTCGAGATGCAAATGGAGGTTTTGGGTAAGATTAAGCACGAGAATGTGGTTCCTCTCAGAGCTTTTTACTTCTCCAAGGATGAGAAATTGCTCGTTTACGATTACATGTCCGCTGGTAGCTTATCTGCTTTGCTTCACGGGAGCAGAGGGTCTGGGCGAACGCCGCTAGATTGGGACAACCGGATGAGAATAGCACTAGGAACCGCAAGGGGGCTAGCATGCCTCCACGTGTCAGGCAAGGTGGTCCATGGCAATATCAAATCTTCCAACATCCTCCTCCGCGGGCCGGACCACGAGGCCTGCGTTTCGGACTTTGGCCTCAACCCGTTATTCGGAAACGGAGCCCCGTCTAACCGTGTTGCGGGTTATCGGGCACCCGAGATCGTGGAAACGCGTAAGGTCAGCTTCAAGTCTGACGTGTACAGCTTCGGTGTGTTGCTGTTGGAGCTATTAACAGGGAAAGCACCCAACCAAGCTTCTCTTGGGGAAGAGGGCATCGATCTTCCAAGGTGGGTCCAGTCCGTGGTTCGCGAAGAATGGACCGCGGAGGTGTTTGATGCTGAGCTCATGAGGTTTCATAACATAGAGGAGGAGATGGTTCAGTTATTGCAGATAGCGATGGCTTGTGTTTCGGTGGTGCCTGACCAGAGGCCTAACATGCAGGATGTGGTTCGCATGATTGAGGACATGAATAGAGGTGAGACGGATGAGGGCTTACGACAGTCGTCCGATGATCCTTCAAAAGGATCGGAGGGTCATACGCCACCTCCGGAGTCAAGGACTCCACCTAGATCGCTCACACCTTAA 1947 0.5383 MALVILVFFHLFLQLSVRVNSDLTQDKQALLAFISQTPHSNRVQWNASDSVCNWVGVQCDDSRSYVSSLRLPAVGLVGRVPPGTIGKLTQLRVLSLRSNGLTGEIPSDFSNLTFLRSLYLQKNQLSGEFPPSLTRLTRLTRLDLSSNNFTGSIPFSINNLVHLSGLFLENNAFSGSLPSVTAKLVGFNVSNNHLNGSIPETLSKFPESSFAGNLDLCGPPLKSCNPFFPAPAPSPSSTSPAGASHKKSNKLSTGAIIGIVVGSVVGLLLLLLLLFLCLRKRQGRQPAKPPKPVATARAAPAEAGTSSSKDDITGGSAEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFEMQMEVLGKIKHENVVPLRAFYFSKDEKLLVYDYMSAGSLSALLHGSRGSGRTPLDWDNRMRIALGTARGLACLHVSGKVVHGNIKSSNILLRGPDHEACVSDFGLNPLFGNGAPSNRVAGYRAPEIVETRKVSFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSVVPDQRPNMQDVVRMIEDMNRGETDEGLRQSSDDPSKGSEGHTPPPESRTPPRSLTP 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi482g00003 648 Gene3D Phosphorylase Kinase; domain 1 308 415 - -
Sebi482g00003 648 CDD STKc_IRAK 347 610 - -
Sebi482g00003 648 MobiDBLite consensus disorder prediction 609 627 - -
Sebi482g00003 648 FunFam pollen receptor-like kinase 1 310 415 - -
Sebi482g00003 648 Pfam Protein kinase domain 344 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi482g00003 648 ProSiteProfiles Protein kinase domain profile. 341 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi482g00003 648 MobiDBLite consensus disorder prediction 609 648 - -
Sebi482g00003 648 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Sebi482g00003 648 MobiDBLite consensus disorder prediction 284 314 - -
Sebi482g00003 648 Pfam Leucine rich repeat N-terminal domain 25 60 IPR013210 -
Sebi482g00003 648 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 416 621 - -
Sebi482g00003 648 PANTHER OS05G0588300 PROTEIN 3 620 - -
Sebi482g00003 648 Gene3D Ribonuclease Inhibitor 183 227 IPR032675 -
Sebi482g00003 648 Pfam Leucine rich repeat 77 125 IPR001611 GO:0005515
Sebi482g00003 648 SUPERFAMILY Protein kinase-like (PK-like) 345 607 IPR011009 -
Sebi482g00003 648 Gene3D Transferase(Phosphotransferase) domain 1 416 628 - -
Sebi482g00003 648 FunFam Probable inactive receptor kinase RLK902 23 181 - -
Sebi482g00003 648 SUPERFAMILY L domain-like 27 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi482g00003 Sebi-Chr482 31138 33936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi482g00003 21 628 Receptor kinase-like Gene Family AT5G58300 53.971 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi482g00003 Pkinase 1.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi482g00003 - - gmx:100806857 986.482