Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi481g00027 ATGGCTAGCCACAGAATAGGAGAACTTGGTTTGTCTGAGTCAGGGCCTTCAAGTCACCATGTCCCTTATGGAGTTCATCACAGGATTAATGCTCCTACATCAAGCTTAATCAATCAAGGATCTGGTTTTGATTTTGGAGAGCTGGAAGAAGCAATTGTTCTGCAAGGAATTAAGAGTAGAAATGATGAAGGCAAAGCATCTTTATTCACAGGCAGACCTGCTGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGAGGAGGTTCCATTTCCAAGTCAGGAGGGGAAAGCACTGATTCAGCTCTTTCAAGCAAAACTGAGAACCCCTTTGAGCCAGAATCTCCCATAAGTAAAAAGGCATCTTCTTCAGATCACCATCTGCACCTTCAACAGGAGATGGCTAATGATGCTCCTTCACAGAATCAATCAGCAGCCAAATCACCTCTGGAAAAGAGAAAGGGAGCTGGTTCCACCTCAGATAATAAACAACTTGATGCAAAGACATTGAGACGTTTAGCTCAAAACAGGGAGGCTGCAAGGAAAAGTCGCCTCAGGAAAAAGGCTTATGTGCAACAGTTAGAGTCAAGTAGATTAAAGCTTACCCAGCTTGAACAAGACCTTCAAAGATCACGTTCTCAGGGAATGTTCATGGATTGGGGTGGTGTTGGAAGCAATGTAAGCTCTGGAGCTGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGATAACAGGCTAATAGGGGAGCTTAGGAATGGATTGCAGGTGCCATTATCAGATAGTGATATGAGAGTGTTGGTGGATGCATATCTCTCTCATTATGATGAAGTTTTCAGGATCAAAGGAGTTGCTGCTAAATCTGATGTCTTTCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGCTGCTTCCTCTGGATTGGTGGTTTTAGGCCCTCTGAACTTATCACGATGTTGATCCAACAATTGGAGCCACTAGCGGAGCAACAAATAATGGGGATGTATGGGCTGAGGCATTCTTCACAGCAAGCAGAGGAGGCTCTTTCTCAAGGTCTTGATCAGTTGCAGCAATCTCTTGTGGACACCATAGCTGGAGGACCCATTGTTGATGGTGTTCAACAGATGGTTGTCGCCATGGGAAAGCTCTCCAATCTTGAAGGATTTGTTCGCCAGGCTGATAATTTGAGACAACAGACTCTTCACCAATTATGTCGATTACTGACAGTTCGTCAAGCAGCACGGTGTTTCCTTGTGATTGGAGAGTACTATGGACGTCTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCAAGAGAGACCTTGATCATCAGCGATGATAACTCATGCCAAACAACCACGGATATGCAAATGGTCCAACCTAATTCTCAGAATCATTTCGCGAGTTTCTGA 1434 0.4449 MASHRIGELGLSESGPSSHHVPYGVHHRINAPTSSLINQGSGFDFGELEEAIVLQGIKSRNDEGKASLFTGRPAATLEMFPSWPMRFQQTPRGGSISKSGGESTDSALSSKTENPFEPESPISKKASSSDHHLHLQQEMANDAPSQNQSAAKSPLEKRKGAGSTSDNKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRSRSQGMFMDWGGVGSNVSSGAAMFDMEYGRWLEEDNRLIGELRNGLQVPLSDSDMRVLVDAYLSHYDEVFRIKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSELITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPIVDGVQQMVVAMGKLSNLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSLWASRPRETLIISDDNSCQTTTDMQMVQPNSQNHFASF 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi481g00027 477 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 176 191 IPR004827 GO:0003700|GO:0006355
Sebi481g00027 477 MobiDBLite consensus disorder prediction 1 22 - -
Sebi481g00027 477 SMART brlzneu 169 245 IPR004827 GO:0003700|GO:0006355
Sebi481g00027 477 SUPERFAMILY Leucine zipper domain 173 215 IPR046347 GO:0003700|GO:0006355
Sebi481g00027 477 Gene3D - 172 221 - -
Sebi481g00027 477 PANTHER TRANSCRIPTION FACTOR TGA9 119 447 - -
Sebi481g00027 477 ProSiteProfiles DOG1 domain profile. 236 444 IPR025422 GO:0006351|GO:0043565
Sebi481g00027 477 MobiDBLite consensus disorder prediction 88 123 - -
Sebi481g00027 477 MobiDBLite consensus disorder prediction 159 174 - -
Sebi481g00027 477 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 171 215 IPR004827 GO:0003700|GO:0006355
Sebi481g00027 477 MobiDBLite consensus disorder prediction 80 174 - -
Sebi481g00027 477 FunFam BZIP family transcription factor 172 221 - -
Sebi481g00027 477 Pfam bZIP transcription factor 172 214 IPR004827 GO:0003700|GO:0006355
Sebi481g00027 477 Coils Coil 192 219 - -
Sebi481g00027 477 MobiDBLite consensus disorder prediction 139 153 - -
Sebi481g00027 477 Pfam Seed dormancy control 254 328 IPR025422 GO:0006351|GO:0043565
Sebi481g00027 477 CDD bZIP_HBP1b-like 173 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi481g00027 Sebi-Chr481 702257 708825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi481g00027 128 477 bZIP Transcription Factor Family AT1G08320 68.611 2.95e-178 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sebi481g00027 DOG1 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi481g00027 K14431 - gmx:100775461 790.801