Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi480g00011 ATGGCCCAAAAACTAATTTCATTTACTTATGATGACCTAGCGGAGCTGGAATGGCTTTCGAATTTCGTGGAGGAATCGTTTTCGAGCGAGGACCTGCAGAAGCTGCAGCTGATATCAGGGGTGAAAGCTCGAAACGACGAAGCAGCATCAGTAGAGGCCCGCGAGTTCCCGTCCGAGCCCAACAGAAACAGCCCCATATTCAACACAGAGGTGTCGGTTCCAGCCAAGGCCCGCAGCAAGAGGACCCGTGGGCCGCCATGCAACTGGACTTCACGCCTCCTCGTCCTGTCACCAACGCCAACGACGTCGTCTCCCGACCCTGAAGTCGTCATTCCCACTCCTACCCTGCCCTCCGTTGCTGTTCCCGTCACCACAAAGAAGCCGGCAAAGGCAGCTCCGAGGAAGAAGGACGGCGGTGACAGCAGTGGCTCAGGGTCCGGCGACGGCCGCAAGTGCCTGCATTGCGCTACGGACAAGACGCCACAGTGGCGAACCGGGCCCATGGGTCCAAAGACTCTGTGCAACGCTTGCGGCGTGAGGTATAAGTCGGGCCGGTTGGTGCCGGAATACAGGCCCGCGGCGAGCCCAACGTTCGTGCTGACGAAGCACTCCAACTCGCACCGTAAGGTGCTGGAGCTGCGAAGGCAGAAGGAAATTGTGCGGTCCCAGCAGCACCAACAGCAGCCGTTCCTACAACATCATCACCATCAGAATATGGTGTTCGATATATCCAACGGTGATGATTACTTGATCCACCAACATGTTGGACCCGATTTTAGGCAGCTGATCTAG 792 0.572 MAQKLISFTYDDLAELEWLSNFVEESFSSEDLQKLQLISGVKARNDEAASVEAREFPSEPNRNSPIFNTEVSVPAKARSKRTRGPPCNWTSRLLVLSPTPTTSSPDPEVVIPTPTLPSVAVPVTTKKPAKAAPRKKDGGDSSGSGSGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEIVRSQQHQQQPFLQHHHHQNMVFDISNGDDYLIHQHVGPDFRQLI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi480g00011 263 MobiDBLite consensus disorder prediction 74 151 - -
Sebi480g00011 263 PANTHER GATA TRANSCRIPTION FACTOR 11 226 - -
Sebi480g00011 263 ProSitePatterns GATA-type zinc finger domain. 152 177 IPR000679 GO:0006355|GO:0043565
Sebi480g00011 263 Gene3D - 145 196 IPR013088 GO:0006355|GO:0008270
Sebi480g00011 263 ProSiteProfiles GATA-type zinc finger domain profile. 146 182 IPR000679 GO:0006355|GO:0043565
Sebi480g00011 263 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 148 210 - -
Sebi480g00011 263 FunFam GATA transcription factor 143 228 - -
Sebi480g00011 263 Pfam GATA zinc finger 152 185 IPR000679 GO:0006355|GO:0043565
Sebi480g00011 263 PIRSF Txn_fac_GATA_plant 1 242 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sebi480g00011 263 SMART GATA_3 146 196 IPR000679 GO:0006355|GO:0043565
Sebi480g00011 263 CDD ZnF_GATA 151 198 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi480g00011 Sebi-Chr480 318660 319579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi480g00011 11 263 C2C2-Gata Transcription Factor Family AT5G25830 58.397 2.34e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi480g00011 GATA 2.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi480g00011 - - zju:107420464 360.918