Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi480g00001 GTACAGGTAGGTGGTTCCCCGTTGTACAGAGTAGAGAGGAAACTTGGGAAGGGAGGGTTTGGACAAGTCTACGTTGGTCGGCGCGTCGGAGCCGGTGGCGGAGCCTTAGAGGTAGCTTTGAAATTTGAGCATAAAAGTAGTAAGGGATGCAATTATGGACCTCCTTATGAGTGGCAAGTTTACAATGCATTAGGTGGTAGTCATGGAGTTCCACGAGTTCATTACAAGGGACGGCAAGCAGATTACTATGTTATGGTCATGGATATGCTGGGCCCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCAGCAGAGATGGTGGCATGTATAGCAATTGAGGCTATATCCATATTAGAGAAAATGCATTCTAGAGGATATGTGCATGGTGATGTAAAACCTGAGAACTTTTTGCTTGGCACCCCGGGAACTCATGATGAGAAAAAGCTTTTTCTTGTTGATCTTGGGTTAGCAACCCGTTGGCGTGATAATTCAACCGGCCTTCATGTTGAGTATGATCAACGTCCAGATGTATTTAGGGGAACAGTTCGTTATGCTAGTGTGCATGCTCATCTCGGTAGAACAAGTAGCAGGAGAGATGATTTGGAATCTCTTGCGTACACACTAATCTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAGAAGATGGCCACCTCCCCTGAAAATTTGTGTAGCTATTGTCCTCCACCTTTTCGGCAATTTGTTGAGTGCGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCACTTTTTGATGGAATTGTTAGTCCAAATCCAGACATTAGACCCATAAATACTGATGGTGCGCAGAAGCTTATATATCAGGTTGGACAAAAGAGAGGACGATTGACCATGGAAGAAGATGATGATGAGCAACCAAAAAAGAAGGTCAGAATGGGAATGCCAGCAACACAATGGATTAGTGTGTACAATGCTCGCCGACCAATGAAGCAAAGGTACCATTACAATGTTGCTGATGTGCGGCTGTCTCAACACATTGAGAAGGGATATGAGGATGGGTTATTTATCAGCAGTGTAGCTTGTTGTTCTAACCTTTGGGCACTTATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCATCCTGCTTTCTTCACAAGGAATGGATTATGGAACAATGGGAAAAGAATTATTACATTAGTGCCATAGCAGGAGCTACTAATGGGAGCTCATTGGTTGTAATGTCCAGAGGGACCCAATACTTGCAGCAGTCCTATAAGGTCAGTGATTCATTTCCATTCAAGTGGATCAATAAAAAATGGAGAGAAGGATTTTATGTGACTGCTATGGCTACTGCTGGAAGTAAATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTTCAGATCAGGTTGTGGAACTTGATTTCCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGAAAATGGTTACCGCATCACTTCAACTGCTGCTACATGGGACCAAGCTGCTTTTGTTCTTAGTATTCCAAGAAGAAAACCGGCTGATGAAACTCAAGAGACACTCAGAACATCTGCCTTTCCTAGTACTCATGTCAAGGACAAATGGGCAAAGAACCTCTATATTGCATCTATTTGCTATGGGAGAACAGTTTCATGA 1710 0.4298 VQVGGSPLYRVERKLGKGGFGQVYVGRRVGAGGGALEVALKFEHKSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQADYYVMVMDMLGPSLWDVWNNNSHTMSAEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGTPGTHDEKKLFLVDLGLATRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTSSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPENLCSYCPPPFRQFVECVVNLKFDEEPNYAKYISLFDGIVSPNPDIRPINTDGAQKLIYQVGQKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVYELSSCFLHKEWIMEQWEKNYYISAIAGATNGSSLVVMSRGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSKWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWENGYRITSTAATWDQAAFVLSIPRRKPADETQETLRTSAFPSTHVKDKWAKNLYIASICYGRTVS 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi480g00001 569 ProSitePatterns Protein kinases ATP-binding region signature. 15 41 IPR017441 GO:0005524
Sebi480g00001 569 ProSiteProfiles Protein kinase domain profile. 9 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi480g00001 569 SMART serkin_6 9 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi480g00001 569 SUPERFAMILY Protein kinase-like (PK-like) 9 286 IPR011009 -
Sebi480g00001 569 CDD STKc_CK1 9 278 - -
Sebi480g00001 569 FunFam casein kinase 1-like protein HD16 1 325 - -
Sebi480g00001 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Sebi480g00001 569 Gene3D Transferase(Phosphotransferase) domain 1 5 330 - -
Sebi480g00001 569 Pfam Protein kinase domain 9 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi480g00001 569 PANTHER CASEIN KINASE-RELATED 13 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi480g00001 Sebi-Chr480 1261 5376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi480g00001 8 164 EF-hand Containing Proteins AT2G17290 30.061 1.50e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Sebi480g00001 Pkinase 2.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi480g00001 - - nnu:104592067 1092.41