Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi47g00086 ATGAGACCATCCTTGTACAATTTTGCCACAAGAAATGATTTGGACCTTTGGCATCTTCAAATGAAGAAAACACCAGGCCCCAATTTTCATCAATCTAGCCAAAGAAAACAGATTGCTATTCTCCATGATATTACAAGCAATGATAAAAAGAGTCACAATCAGACTGCACTTCAATCTTTCAAATCTGCTGTCAAGAAATGTGCAGCTGTTTTTGCATTGATTTTCTCTGGGAAAAGAAAAAGAGCCTCAATAGTTGTTGGAAATGATGACAGACAGAATACATCAAAAGTCAGAGGGGTGGTATCATCTTCAACTGATTTGTCATCTGAAAGTACCAAGAATTCATCAAAATGGAAGTTTTCTTATTCCTATGCATCATCTAGCACTAAAAGTGGACAACTTGGTGTTGGGGAATTCACATATGAAGAAATTTACAAGTCAACTGCAAAATTCTCCCAAGATAATCAGATTGGGGAAGGTGGATTTGGAACAGTCTACAAGGGAAAGCTTAATGATGGATCTATTGTGGCTGTGAAGCGTACCAAGAAGGAGGTACTACACCACCACCTATATGAGTTCAAGAATGAAATAATCACCTTGTCAAAAATTGAGCATCTGAATCTTGTGAGGTTATATGGATATTTGGAGCATGGAGATGAGAAGCTTATTGTTGTTGAATACGTTGGTAATGGAACACTTCGAGAACATTTAGATGGCGTTCGGGGAGATGGACTAGAAATTGGTGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATCCATAGAGACATCAAATCAACAAATATCTTAATCACTGAGAACCTAAGGGCCAAAGTTGCAGATTTTGGTTTTGCAAGGTTGTCTGATGACCCTGGTGCAACCCATATTTCAACTCAAGTTAAAGGAACAGCTGGATACATGGATCCTGAGTACCTAAGAACATTTCAACTCACTGAAAAGAGTGATGTTTATTCCTTTGGTGTATTGCTTGTTGAAATGATGACAGGAAGACATCCAATAGAATCAAAGAGACCAATTGAAGAGAGAGTGACAATCAGATGGGCAATGAGAATGCTGAAAAAAGGGGATGTTGTGTTTACCATGGACCCGAGACTGCGAAGAAGTCCAGCCTCTATCAGTGCAGTGAAGAAGGTTCTCAAGTTAGCTTCCCAATGTCTTGCATCTTCGAGACAAACAAGGCCACCTATGAAGAATTGTGCAGAGATTCTGTGGGGTATCCGTAAGAGTTTTAGAGAAGAAGCCATTTCTCATCCTCCTATTCCTTCTCACCACTCTGAAAATTTTCCTCAAAGAGAAAAAAATAAGCAGATGACATTTGGTATCGAAGATGATGACAGCTACAAATTTGCCTCTGCACCTAATCATATTCATTCATAA 1437 0.3876 MRPSLYNFATRNDLDLWHLQMKKTPGPNFHQSSQRKQIAILHDITSNDKKSHNQTALQSFKSAVKKCAAVFALIFSGKRKRASIVVGNDDRQNTSKVRGVVSSSTDLSSESTKNSSKWKFSYSYASSSTKSGQLGVGEFTYEEIYKSTAKFSQDNQIGEGGFGTVYKGKLNDGSIVAVKRTKKEVLHHHLYEFKNEIITLSKIEHLNLVRLYGYLEHGDEKLIVVEYVGNGTLREHLDGVRGDGLEIGERLDIAIDVAHAITYLHMYTDNPIIHRDIKSTNILITENLRAKVADFGFARLSDDPGATHISTQVKGTAGYMDPEYLRTFQLTEKSDVYSFGVLLVEMMTGRHPIESKRPIEERVTIRWAMRMLKKGDVVFTMDPRLRRSPASISAVKKVLKLASQCLASSRQTRPPMKNCAEILWGIRKSFREEAISHPPIPSHHSENFPQREKNKQMTFGIEDDDSYKFASAPNHIHS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi47g00086 478 SUPERFAMILY Protein kinase-like (PK-like) 132 426 IPR011009 -
Sebi47g00086 478 Gene3D Transferase(Phosphotransferase) domain 1 228 438 - -
Sebi47g00086 478 ProSitePatterns Protein kinases ATP-binding region signature. 157 179 IPR017441 GO:0005524
Sebi47g00086 478 Gene3D Phosphorylase Kinase; domain 1 110 227 - -
Sebi47g00086 478 ProSiteProfiles Protein kinase domain profile. 151 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi47g00086 478 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 69 442 IPR044652 GO:0004672
Sebi47g00086 478 CDD STKc_IRAK 157 423 - -
Sebi47g00086 478 Pfam Protein tyrosine and serine/threonine kinase 153 423 IPR001245 GO:0004672|GO:0006468
Sebi47g00086 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Sebi47g00086 478 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 115 227 - -
Sebi47g00086 478 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 228 437 - -
Sebi47g00086 478 SMART serkin_6 151 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi47g00086 Sebi-Chr47 2612173 2616417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi47g00086 123 416 Receptor kinase-like Gene Family AT1G79620 44.186 1.56e-69 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Sebi47g00086 PK_Tyr_Ser-Thr 4.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi47g00086 - - gmx:100811511 721.079