Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi47g00067 ATGGGTGCCGTCGATTGCTGTGCGCCGCCGCGTAGGGAGGAGATAGCGGTGCTGTCTCTCAACACTTTACCTTTGGGTTTCCGATTCCGTCCAACCGATGAGGAGCTCATCGATTACTACCTGCGCTTGAAGATCAATGGAAATGGAGATGATGTTTGGGTTATCCGTGAAATCGATGTCTGTAAATGGGAACCTTGGGATTTGCCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTTTTCTGTCCACAGGACCGCAAGTACCCAAATGGGCACAGGTTGAACCGAGCAACAAGTCATGGGTATTGGAAGGCAACGGGCAAGGATCGCAAGATTAAGTCTGGTAACACCTTGATTGGAATGAAGAAGACTCTAGTTTTCTACACTGGTCGTGCTCCCAAAGGGAAGAGAACCAATTGGGTTATGCATGAGTACAGGCCTACACTGAAGGAGCTTGATGGTACCAATCCTGGACAGAATCCGTATGTCCTTTGTCGCTTATTCAAAAAAAATGATGAGACTCTTGAAGGCTCGAACTGTGATGAAGTGGACCAGACTACTTCAACTCCTACTACTGCCAATTACTCTCCAGAAGAAATACTATCTGATCCAACTCTGGTTCCTGTATCTTCCTCCCAAGCTACAGAAGATGATAAGCAATTAGCAGTTATCAATGAGAACTCTGAGGAAGCAATATCTAACATTATAACTCCAGCTGATTGCCATAGTGATGGATGTGATGCTCATGATGCCAGAAATCAAATTGTAGAACCAGCTATAGAGGAGGATCAGCCATTGAACTTGGACATATTTTATGACCTAACAAATGAGCAATTGGATGACAAATTATTCTCTCCAGTCCATGCGCATTTTCCATCAGGATTTTATTATCAACCTAACAATGAATTACAACTTCAGTATGGTACCAATGAGACGACTATTTCAGACTTTATTAGCTCAGTTGTTAATTGGGATGAGTTCTCCCATGAGGAATCTAGCAGTCTAGAGCTGAACTCAGCATTGATTAATGTTAAGGACAATGGATCATGCAGTGACTCAGATGTGGACATGGCCAATATGACGCATCTGCAACCATTACAGGCTGCTTATCCAAATGAAGCAATTGAGCAAACAAGCAATGTGGGATTATTTCAGAACAATTCCCAAATGGCTTTCTCAACTGATGTTAGTATGGGTCAAATGTCCAGTGTGGTCAATGATTATGAGCAATCAAGGAACTTTGATATGGCTGTTCATGGTGATACTGGAATCAGGATAAGGAGTCGACAAGGACGAATTGAGCAGCCAAACACGAACCCAATGATACAAGCGCAAGGTATTGCACCAAGGAGAATCCGATTGGGAGGATTTGTTACACGTCAGCGTGGTTCCAATGAGACAGAAAAGGATGGAAGTTGTGCACCAGAAGACCATAATTCAAAAATCACCATTGCTGGGGAGAGGAAAGCTTCAGAAAACCAACTTGCTACTGAGAGTGCCACGGTTACTAATGACACGGATGAACCGGAGAAGACATCTCCTGAGTCAGCTGACACAAGAAAGATTTGTCAAGAAGATGTTGCAACTGCAGAATCCATGTTGGAGTCAAAAAACCTTCTATTGGGCAGAAGGGTCCGTTACACGGCAAAGGTTTCCTCCAATCGCGCCATGTGGTCTACTGTTTTTGCAGTTTCTGCCATTGTACTGGCCTCACTACTATTGCTTGTCAATATATGGGGATATCTTAGATCTAAAACTGCTTACTAG 1776 0.4364 MGAVDCCAPPRREEIAVLSLNTLPLGFRFRPTDEELIDYYLRLKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRKIKSGNTLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKNDETLEGSNCDEVDQTTSTPTTANYSPEEILSDPTLVPVSSSQATEDDKQLAVINENSEEAISNIITPADCHSDGCDAHDARNQIVEPAIEEDQPLNLDIFYDLTNEQLDDKLFSPVHAHFPSGFYYQPNNELQLQYGTNETTISDFISSVVNWDEFSHEESSSLELNSALINVKDNGSCSDSDVDMANMTHLQPLQAAYPNEAIEQTSNVGLFQNNSQMAFSTDVSMGQMSSVVNDYEQSRNFDMAVHGDTGIRIRSRQGRIEQPNTNPMIQAQGIAPRRIRLGGFVTRQRGSNETEKDGSCAPEDHNSKITIAGERKASENQLATESATVTNDTDEPEKTSPESADTRKICQEDVATAESMLESKNLLLGRRVRYTAKVSSNRAMWSTVFAVSAIVLASLLLLVNIWGYLRSKTAY 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi47g00067 591 SUPERFAMILY NAC domain 18 173 IPR036093 GO:0003677|GO:0006355
Sebi47g00067 591 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 265 - -
Sebi47g00067 591 MobiDBLite consensus disorder prediction 489 506 - -
Sebi47g00067 591 Gene3D NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Sebi47g00067 591 MobiDBLite consensus disorder prediction 461 523 - -
Sebi47g00067 591 MobiDBLite consensus disorder prediction 179 202 - -
Sebi47g00067 591 MobiDBLite consensus disorder prediction 466 488 - -
Sebi47g00067 591 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Sebi47g00067 591 MobiDBLite consensus disorder prediction 183 202 - -
Sebi47g00067 591 MobiDBLite consensus disorder prediction 507 523 - -
Sebi47g00067 591 FunFam Nac domain-containing protein 86 32 176 - -
Sebi47g00067 591 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi47g00067 Sebi-Chr47 2152732 2156267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi47g00067 15 457 NAC Transcription Factor Family AT4G35580 45.396 3.56e-104 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi47g00067 NAM 9.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi47g00067 - - gmx:100778903 850.506