Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi47g00051 ATGAAGACCATTCTATCATCGGAGACGATGAACATCCCCGACGGTGTCACCATCAAGGTGCACGCCAAGGTGATCGAGGTGGAAGGTCCACGTGGCAAGCTGGTGCGTGACTTCAAGCACTTGAACCTCGATTTCCAACTCATCACCGACGAGAACGGCAACAAGAAGCTCAAGGTCGAATCATGCCACGTCGAGAATCTCATCACTGGCGTCACCAAAGGTTACCGCTACAAGATGCGTTTCGTCTATGCTCACTTTCCAATTAACGCTAGCATCACCAACAACAACACTGCCATTGAGATCCGAAACTTCCTTGGCGAAAAGAAGGTAAGGAAAGTGGACATGCTCAACGGTGTCACTGTAGTTCGATCTGAAAAGGTCAAGGATGAGTTGGTTTTGGATGGAAATGATATCGAGCTTGTTTCTCGATCTTGTGCCCTCATTAACCAGAAATGCCATGTTAAAAACAAAGATATCCGGAAGTTCCTTGATGGTATCTATGTTAGCGAGAAGGGGACAATACTTGAAGAGTAG 534 0.4682 MKTILSSETMNIPDGVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLITDENGNKKLKVESCHVENLITGVTKGYRYKMRFVYAHFPINASITNNNTAIEIRNFLGEKKVRKVDMLNGVTVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTILEE 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi47g00051 177 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 174 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi47g00051 177 SUPERFAMILY Ribosomal protein L6 1 74 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi47g00051 177 Gene3D - 1 74 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi47g00051 177 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 175 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi47g00051 177 FunFam 60S ribosomal protein L9 75 177 - -
Sebi47g00051 177 Gene3D - 75 177 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi47g00051 177 SUPERFAMILY Ribosomal protein L6 75 171 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sebi47g00051 177 ProSitePatterns Ribosomal protein L6 signature 2. 150 171 IPR002359 GO:0003735|GO:0005840|GO:0006412
Sebi47g00051 177 Pfam Ribosomal protein L6 86 165 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi47g00051 Sebi-Chr47 1403289 1404777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi47g00051 1 177 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 78.238 1.59e-105 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi47g00051 K02940 - gmx:100306058 308.916