Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi47g00033 ATGGGGATAAACAGCTTTCTATGGAATTTTACTAAAAAGTTCATTACATTTGGGCTCATTACTGTGACTGTGTCCGATCGTTATGTGACTGTTGTTCCAGTTAGGGGTGGTTCTATGTCTCCCACATTCAATCCTAAAGCCAATTCTTTGACAGGAGATTTTTCTGATGACTATGTCTTGGTTGAGAAATTTTGCCTTCACAAGTACAAGTTTTCACATGGTGATGTGGTGGTCTTCCGCTCCCCATTGAATCACAAAGAGACACATGTAAAGAGAATAATTGCATTACCTGGTAAATGGTTTGGCACTCGTCATAACTATGATGTGCTGAAGATTCCGGAAGGACATTGTTGGGTTGAGGGAGACAATGCAGCTTCTAGCTTGGATTCAAAATCATTTGGACCTATTCCTTTGGGTCTAGTTCGAGGAAGGGTTACCCATATTGTATGGCCTCCTCATAGAATAGGAGCTGTCAAGAGTACTTCACCAGAAGGATTATCTTCTCTATAG 510 0.4098 MGINSFLWNFTKKFITFGLITVTVSDRYVTVVPVRGGSMSPTFNPKANSLTGDFSDDYVLVEKFCLHKYKFSHGDVVVFRSPLNHKETHVKRIIALPGKWFGTRHNYDVLKIPEGHCWVEGDNAASSLDSKSFGPIPLGLVRGRVTHIVWPPHRIGAVKSTSPEGLSSL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi47g00033 169 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 164 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Sebi47g00033 169 Pfam Signal peptidase, peptidase S26 8 98 IPR019533 GO:0004252|GO:0006465
Sebi47g00033 169 Pfam Signal peptidase, peptidase S26 109 150 IPR019533 GO:0004252|GO:0006465
Sebi47g00033 169 CDD S26_SPase_I 31 145 IPR019533 GO:0004252|GO:0006465
Sebi47g00033 169 SUPERFAMILY LexA/Signal peptidase 29 158 IPR036286 -
Sebi47g00033 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi47g00033 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi47g00033 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi47g00033 169 Gene3D Umud Fragment, subunit A 26 161 - -
Sebi47g00033 169 FunFam Mitochondrial inner membrane protease subunit 25 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi47g00033 Sebi-Chr47 1003475 1005580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi47g00033 39 161 MADS-box Gene Family AT1G29960 34.884 1.67e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi47g00033 K09648 - gmx:100527429 290.426