Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi47g00020 ATGGCAGGCAACCTTTATTATAGCTTGTGTTCCTTTTATTGTTTTCTCCTTCTTCTCATAACGGTATCTCACGCCCAGCCAAACTTCTATCCCTCTTGTTCCAACGATAAAGGAAACTACACAGCCAATAGCACCTATCGTAACAACCTCAACACCCTTTTGTCTAGTCTTTCCTCCAAAACAGAAATCGATTACGGTTTCTACAATTTCTCTTATGGCGAAGACACTGACAAAATATACGCAATTGGACTATGCAGAGGAGATGTTCAACCTGACGATTGCCGTAACTGCCTCAACAATTCAAGAGTCCTTCTCACGCAGAATTGTCCAAATCAGAAAGAAGCTATTGGTTGGATTGATAACTGCATGTTGCGTTACTCAAACCGCTCAATATTTGGCATCATGGAAACTCTACCTGGGCTTTATATGTGGAACACAAATAATGCAACACAGGTGGATGAGTACAACCAAGTTCTCGGGAACTTGTTGCGTAGCATAAGAGACAAAGCTACATCAGGGGACTCAAGGCTTAAGTATGCTACAGGAAACGTTACTGGTCCGAATTTTCAAAACATATATGGGCTTATGCAGTGCACGCCTGATCTATCTGACTTAAAATGCGATGAATGCTTGGGTGGGGCTATCTCAGATCTCCCAGGATGTTGTAATAACAAGGTAGGAGGTAGAGTTATTAGACCCAGTTGTAATATTAGATATGAAACATACCGCTTCTATCAAGCTACTGCAGAAGCACCATCACCGTTATCGCCATCAACTCCGCCGCCACCACCACCGTCCATCAATAACACTTCCTCGGGAGGAGGAAAAAGCAACACATCACTGATTGCCATTGCCATAGCAGTCCCAGTTGCAGTTGTTGTTTTGGTGCTCAGTATTATCTGCACCTATTTACGAATGAAGAAGCCAAGGGAAATTTCAAAAATTCCTTCGGAAGATGATGATGAAATTAAAACCAATGAGTCATTGCAATTTAACTTTGACACCATACGACTTGCTACAAATGACTTTTCTGATTCTAATAAACTTGGAGAAGGTGGATTCGGAGCTGTTTACTGGGGTAGGCTCTCTAATGGACAAATGATTGCTGTCAAAAGGTTGTCAATGAATTCCAACCAAGGAGATGTGGAATTTAAGAATGAAGTGCTTTTAGTGGCTAAGCTTCAACACCGAAATTTAGTTAGGCTACTTGGTTTCAGTCTAGAAGGGAGAGAAAGACTATTAGTCTATGAATTTGTTCCTAATAAAAGTCTTGACTACTTTATATTTGATCCAATAAAGAAAGCACAATTGGATTGGGAAAAGCGCTACAAAATTATTGGAGGTATTGCTCGAGGCCTTCTTTACCTTCACGAGGATTCACAACTACGTATTATCCATCGTGATCTCAAAGCAAGCAATATCCTTTTAGATGAAGTGATGAATCCAAAGATATCAGATTTTGGCATGGCAAGACTGATTGTTGTGGATCAGACACAAGTAAATACGAGTAGAATTGTTGGAACCTATGGATACATGGCACCAGAGTATGCAATGCATGGACAATTTTCAGTGAAATCAGATGTCTTCAGTTTTGGTGTACTAGTTCTTGAGATAATAAGTGGCCAAAAAAATAGTGGCATTCGTCATGGGGAGAGCGTGGAGGATCTATTGAGCTTCGCATGGAGAAATTGGAGGGAGGGGACAGCTACAAATATTATAGATCCATTATTAAACAACTGTCCACGAAATGAAATGATCAGATGCATCCATATTGGTTTACTCTGTGTTCAAGAAAATTTAGCCAACAGACCAACTATGGCTACCATTGCACTCATGCTTAACAGTTATTCTCTCACTCTCCCTGTACCATCAGAACCTGCATTTTTTGTGGACAGTAGAACTAGAAGCCTTCCAGACATGCAGTTGTGGGAAGATAATTCAGGGGCAACAAGATCAAGTGAATCCACAACTAAATCAGTTCGAGAATCGGTAAATGAGGCTTCAATTACCGAGCTATATCCTCGTTAG 2028 0.4068 MAGNLYYSLCSFYCFLLLLITVSHAQPNFYPSCSNDKGNYTANSTYRNNLNTLLSSLSSKTEIDYGFYNFSYGEDTDKIYAIGLCRGDVQPDDCRNCLNNSRVLLTQNCPNQKEAIGWIDNCMLRYSNRSIFGIMETLPGLYMWNTNNATQVDEYNQVLGNLLRSIRDKATSGDSRLKYATGNVTGPNFQNIYGLMQCTPDLSDLKCDECLGGAISDLPGCCNNKVGGRVIRPSCNIRYETYRFYQATAEAPSPLSPSTPPPPPPSINNTSSGGGKSNTSLIAIAIAVPVAVVVLVLSIICTYLRMKKPREISKIPSEDDDEIKTNESLQFNFDTIRLATNDFSDSNKLGEGGFGAVYWGRLSNGQMIAVKRLSMNSNQGDVEFKNEVLLVAKLQHRNLVRLLGFSLEGRERLLVYEFVPNKSLDYFIFDPIKKAQLDWEKRYKIIGGIARGLLYLHEDSQLRIIHRDLKASNILLDEVMNPKISDFGMARLIVVDQTQVNTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIISGQKNSGIRHGESVEDLLSFAWRNWREGTATNIIDPLLNNCPRNEMIRCIHIGLLCVQENLANRPTMATIALMLNSYSLTLPVPSEPAFFVDSRTRSLPDMQLWEDNSGATRSSESTTKSVRESVNEASITELYPR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi47g00020 675 MobiDBLite consensus disorder prediction 254 268 - -
Sebi47g00020 675 SUPERFAMILY Protein kinase-like (PK-like) 328 640 IPR011009 -
Sebi47g00020 675 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 673 - -
Sebi47g00020 675 MobiDBLite consensus disorder prediction 640 675 - -
Sebi47g00020 675 FunFam cysteine-rich receptor-like protein kinase 10 419 620 - -
Sebi47g00020 675 Gene3D - 28 130 IPR038408 -
Sebi47g00020 675 Gene3D - 140 244 IPR038408 -
Sebi47g00020 675 CDD STKc_IRAK 349 614 - -
Sebi47g00020 675 MobiDBLite consensus disorder prediction 640 666 - -
Sebi47g00020 675 MobiDBLite consensus disorder prediction 250 273 - -
Sebi47g00020 675 Pfam Protein tyrosine and serine/threonine kinase 346 610 IPR001245 GO:0004672|GO:0006468
Sebi47g00020 675 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Sebi47g00020 675 ProSiteProfiles Protein kinase domain profile. 343 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi47g00020 675 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 131 - -
Sebi47g00020 675 Gene3D Phosphorylase Kinase; domain 1 317 418 - -
Sebi47g00020 675 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Sebi47g00020 675 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Sebi47g00020 675 Pfam Salt stress response/antifungal 147 242 IPR002902 -
Sebi47g00020 675 SMART serkin_6 343 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi47g00020 675 FunFam Cysteine-rich receptor-like protein kinase 10 139 244 - -
Sebi47g00020 675 Gene3D Transferase(Phosphotransferase) domain 1 419 620 - -
Sebi47g00020 675 FunFam Cysteine-rich receptor-like protein kinase 17 312 418 - -
Sebi47g00020 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Sebi47g00020 675 ProSiteProfiles Gnk2-homologous domain profile. 137 244 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi47g00020 Sebi-Chr47 583023 587725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi47g00020 12 675 Receptor kinase-like Gene Family AT4G21410 49.708 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi47g00020 PK_Tyr_Ser-Thr 5.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi47g00020 - - tpra:123920197 911.753