Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi47g00017 ATGAAGTTCCCAGTTTTTGTTGTTCCATTTGTTCTGCTAAGCTTTATACTATCTCTCTTTGGCTTGATTGTAGCTGACTTGAACTCTGACAGACAAGCTCTCCTTGAGTTTTCTTCTAGTGTTCCACATGCTCCAAAGTTAAACTGGAATGACTCTACTCCAATTTGCACTTCATGGGTTGGTGTGACTTGCAATCCAAATGAGACTCATGTAATTGGCATCCATCTTCCAGGGGTTGGATTCAAGGGCTCCATTCCTAATAACAGCCTAGGAAAACTTGATGCTCTCAGAATTCTAAGCCTTCATTCCAATGGCCTTAGTGGAAATCTTCCTTCTGACATTTTCTCCATTCCTTCACTCCAATATGTAAACCTGCAGCACAATAACTTCTCAGGCCTAATTCCTTCCTCTGTCTCCCCTAAACTCATAGCATTGGATATTTCTTTTAACTCCTTCTCTGGCAGTATCCCACCTACATTTCAGAATCTCAGAAGACTAACTAGCTTGTATCTCCAAAACAATTCCATCTCTGGAGCCATCCCTGACTTCAACCTTCCAAGGCTCAAATATTTGAATTTGAGCTATAATAACTTGAATGGCTCAATTCCAAATTCCATCAATCAATTCCCCTATACTTCTTTTGTTGGGAACTCTCTCTTATGTGGGCCACCTCTCAATCATTGTTCTGCAATCTCCCCTTCTCCATCTCCTTCTCCTGTTTACCAACCACTCTCTCCATCAACTTCCCAAAATCAAAATGCTACCACTTCAAAGAAATTCTTTGGCCTTGTTTCTATCCTTGCTCTAGCAGTTGGGGGTTGTGCCTTCCTCTCTCTCCAAGTTTTGGTGATCTTTGTATGCTGTTTGAAGAGAAAAAAGAGTAAAAGAAGTACTGGTGGTATACTGAAAGGAAAGGCATCTTGTGCTGGAAAGACTGAGATTTCAAAGAGTTTTGGGAGTGGGGTGCAAGAGGCTGAAAAGAACAAATTGTTCTTCTTTGAAGGTTGCTCTTATAGCTTTGACCTTGAAGATTTATTGAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATACAAGGCTGCATTAGAGGAGGGAACAACAGTGGTAGTTAAAAGGCTGAGGGAAGTTGTGGTTGGAAAGAAGGAGTTTGAGCAACAGATGGAGGTTGTGGGAAGAATTGGACAACACCCCAATGTGGTACCCCTTCGAGCTTATTACTATTCCAAAGATGAGAAACTTCTAGTTTATAACTATATGCCAGGAGGAAGCTTGTTTGCCTTGTTGCATGGAAGAACTCCATTAGACTGGGAATCAAGAATGAAGATTACACTTGGAGCTGCAAAAGGAATTGCTTCCATTCACACAGAGGGGGGTACAAGGTTTGCACATGGCAACATCAAGTCATCCAATGTGCTCATAACCCAAGAAGTTGATGGTTGCATCACTGATGTTGGACTAACTCCTCTAATGAACAACCCATCAACCATGTCAAGAGCCAATGGCTATTGTGCTCCAGAAGTGGCTCAGTCAAGGAAGATCACACACAAGTCTGATGTTTATAGCTTTGGGGTAGTCCTTCTTGAAATGCTTACAGGGAAGACCCCATTAGGATATGCTGGATATAATGACATTGTTGATCTTCCAAGGTGGGTGAGGTCTGTGGTTCGTGAGGAATGGACAGCTGAAGTTTTTGATAAGGAATTGTTGAGAGGGCAATATGTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTGGCATGTGTGGCAAAGGTGGCAGATAATAGGCCAACAATGGATGAAGTTGTTAGAAACATAGAGGAAATTAGGTACCCTGAGTTGAAGAACCGTACATCCTCTGAGTCTGAATCTAATGTACAAACACCATGA 1902 0.4217 MKFPVFVVPFVLLSFILSLFGLIVADLNSDRQALLEFSSSVPHAPKLNWNDSTPICTSWVGVTCNPNETHVIGIHLPGVGFKGSIPNNSLGKLDALRILSLHSNGLSGNLPSDIFSIPSLQYVNLQHNNFSGLIPSSVSPKLIALDISFNSFSGSIPPTFQNLRRLTSLYLQNNSISGAIPDFNLPRLKYLNLSYNNLNGSIPNSINQFPYTSFVGNSLLCGPPLNHCSAISPSPSPSPVYQPLSPSTSQNQNATTSKKFFGLVSILALAVGGCAFLSLQVLVIFVCCLKRKKSKRSTGGILKGKASCAGKTEISKSFGSGVQEAEKNKLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYKAALEEGTTVVVKRLREVVVGKKEFEQQMEVVGRIGQHPNVVPLRAYYYSKDEKLLVYNYMPGGSLFALLHGRTPLDWESRMKITLGAAKGIASIHTEGGTRFAHGNIKSSNVLITQEVDGCITDVGLTPLMNNPSTMSRANGYCAPEVAQSRKITHKSDVYSFGVVLLEMLTGKTPLGYAGYNDIVDLPRWVRSVVREEWTAEVFDKELLRGQYVEEEMVQMLQIALACVAKVADNRPTMDEVVRNIEEIRYPELKNRTSSESESNVQTP 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi47g00017 633 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 423 624 - -
Sebi47g00017 633 Gene3D Transferase(Phosphotransferase) domain 1 423 632 - -
Sebi47g00017 633 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515
Sebi47g00017 633 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Sebi47g00017 633 ProSiteProfiles Leucine-rich repeat profile. 187 209 IPR001611 GO:0005515
Sebi47g00017 633 SUPERFAMILY L domain-like 38 226 - -
Sebi47g00017 633 Gene3D Phosphorylase Kinase; domain 1 313 422 - -
Sebi47g00017 633 Pfam Protein kinase domain 351 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi47g00017 633 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Sebi47g00017 633 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Sebi47g00017 633 ProSiteProfiles Protein kinase domain profile. 347 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi47g00017 633 Gene3D Ribonuclease Inhibitor 141 230 IPR032675 -
Sebi47g00017 633 ProSitePatterns Protein kinases ATP-binding region signature. 353 384 IPR017441 GO:0005524
Sebi47g00017 633 PANTHER OS05G0588300 PROTEIN 11 624 - -
Sebi47g00017 633 FunFam Probable inactive receptor kinase RLK902 27 174 - -
Sebi47g00017 633 CDD STKc_IRAK 353 613 - -
Sebi47g00017 633 FunFam pollen receptor-like kinase 1 315 422 - -
Sebi47g00017 633 SUPERFAMILY Protein kinase-like (PK-like) 351 610 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi47g00017 Sebi-Chr47 484430 486813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi47g00017 12 631 Receptor kinase-like Gene Family AT5G58300 59.591 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi47g00017 Pkinase 5.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi47g00017 - - vum:124839146 974.926