Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi47g00016 ATGGTTTCCTCTCAGTTCTCTGCCTTAAATAGAAATTGTTCACAGAAGCCTTTCCTGAACCCCTTGCTTCTTCCAAGTGGACCTCCTGATTTTGTGGATTCTGAATTTTCTGATGTGTTTGGTCCATCTCCTGTTGAAACCTCAATAACAGTGAGCTCTGGGGAACCTGGAAATTTGGTCCATCAAACTTTCCTGGCTCCCACAACCTTTGTTAGTCAGTCATTGGAGCTTAACAGGCTCACTTTACATGAGACAGGTGATGCATTGGATCTTGTGGAGGAAGTCTTTAGAGAAACACAGGAAGAGCTTAAGGAAGATTCTGTTAACATTAACAATGCTGCTGTAGAGGAAAATAATTTACAATTCAATAATTACTGTCTGAATCTGAATCATCAGACTGTTGGAGTTGATGATTTTGAAGTTTTGAAGGTTGTTGGGCAAGGTGCTTTTGGTAAGGTGTACCAGGTGAGGAGGACAGGTACTTCAGAAATATATGCTATGAAGGTCATGCGCAAGGATAAGATTATGCAGAGAAATCATGTTGAATATGTAAAATCTGAAAGGGATATATTGACAAAGGTGGGCCATCCATTTATTGTGCGGCTCAGATACTCATTCCAAACCAAATATAGGTTATACCTTGTGCTTGATTTTGTCAATGGTGGTCACCTATTCTTTCAACTTTATCACCAAGGCCTATTCAGGGAAGATTTGGCACGCTTCTATGCTGCAGAGATTATTTGTGCTGTTTCTCATCTTCATGCAAATAATATAATGCACAGGGATCTTAAACCTGAAAATATTCTTCTCGATGCAGATGGTCATGTAGTGTTAACAGATTTTGGACTGGCAAAGGAATGCAATGAGACTGCAAGGTCAAATTCTATGTGTGGAACTTTGGAGTACATGTCCCCTGAAATTGTTATAGGGAAAGGTCATGATAAGACAGCCGATTGGTGGAGTGTGGGAATTTTACTATATGAAATGCTTACAGGGAAGAAAGATGCCAGCAAACGCCTTGGCAGTGGACCAAGTGGCAGTGAAGAGATTAAAAGCCACAAGTGGTTTAAGTCAGTCAATTGGAAGAAACTGGAAGCCCGTGAAATCAGGCCAAGCTTTGTCCCAGAAGTTGCTGGGAAGCACTGTGTTGCTAACTTTGAGGAGAGGTGGACTACCATGCCCTTGCTGGATTCTCCAGCTGCTAGTCCCAAAAAAGGTGACAAGACCTTCAAGAAGTTCTCCTTTACTGGTACTCCAACTGTATCATGTTCATGA 1275 0.4149 MVSSQFSALNRNCSQKPFLNPLLLPSGPPDFVDSEFSDVFGPSPVETSITVSSGEPGNLVHQTFLAPTTFVSQSLELNRLTLHETGDALDLVEEVFRETQEELKEDSVNINNAAVEENNLQFNNYCLNLNHQTVGVDDFEVLKVVGQGAFGKVYQVRRTGTSEIYAMKVMRKDKIMQRNHVEYVKSERDILTKVGHPFIVRLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARFYAAEIICAVSHLHANNIMHRDLKPENILLDADGHVVLTDFGLAKECNETARSNSMCGTLEYMSPEIVIGKGHDKTADWWSVGILLYEMLTGKKDASKRLGSGPSGSEEIKSHKWFKSVNWKKLEAREIRPSFVPEVAGKHCVANFEERWTTMPLLDSPAASPKKGDKTFKKFSFTGTPTVSCS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi47g00016 424 Gene3D Transferase(Phosphotransferase) domain 1 219 333 - -
Sebi47g00016 424 Gene3D Transferase(Phosphotransferase) domain 1 335 375 - -
Sebi47g00016 424 SMART pkinase_C_6 357 417 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi47g00016 424 CDD STKc_AGC 145 356 IPR045270 GO:0004674|GO:0005524
Sebi47g00016 424 ProSiteProfiles Protein kinase domain profile. 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi47g00016 424 PANTHER RIBOSOMAL PROTEIN S6 KINASE 333 420 - -
Sebi47g00016 424 Pfam Protein kinase domain 139 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi47g00016 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Sebi47g00016 424 SMART serkin_6 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi47g00016 424 FunFam Non-specific serine/threonine protein kinase 220 304 - -
Sebi47g00016 424 ProSiteProfiles AGC-kinase C-terminal domain profile. 357 424 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi47g00016 424 Gene3D Phosphorylase Kinase; domain 1 137 218 - -
Sebi47g00016 424 Gene3D Phosphorylase Kinase; domain 1 376 397 - -
Sebi47g00016 424 SUPERFAMILY Protein kinase-like (PK-like) 119 400 IPR011009 -
Sebi47g00016 424 FunFam Non-specific serine/threonine protein kinase 136 240 - -
Sebi47g00016 424 ProSitePatterns Protein kinases ATP-binding region signature. 145 168 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi47g00016 Sebi-Chr47 480426 483375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi47g00016 1 419 AGC Kinase Gene Family AT3G08720 57.143 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Sebi47g00016 Pkinase 4.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi47g00016 K04688 - gmx:100803509 634.409