Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi47g00004 ATGGGTAGACGTAAAAGTAAACCACATCGATCAGGTGGGATAATACTAGAAACAAATGCTACTGCTGAAACAGAATTGGGTAAACAGAATGTTGTAGAAGCAGGAAAAGAAGCAAAGGATAGTTGTGGTGACATTGATAAACCTTATTTTGTGGAGGTTGACCGGTCAGGTTGGTTGTCAAGTGAACACCTTGATATTTCTGAAGTTGTTTTAAGTGATTTGAATTTGAGAGAAGATTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATCAAGATCCCCAATACGTGTTAAGATTTCGGGTGTGTAATGTTAGCAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCTGTGTTACCCTATACTGATATTCAGCTAGAGTTTGTAAAAAGAGCTATGGTTGACAATGTGGAATCGTGTACAGTATTGCTATCTGGTACTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTGTTCACTTGGCAAATTTGAAATTTGTTACATTGAGGGCTGTTCTTGGGATTAGGCTTTCTGAGGAAATTACTTCCCTCAGGGTAAGGATTGAGGTACTAAAGAGTGCTTTCGATGCATGCGAGTCACTTCTTGAGGGTTCTAGACAACTATGGAAAAAGAGTATGATGAATGTCATGTCTTGGCTACGACCAGAAATAATGACTTCAGAAGTTAGGTATGGACTTGGTAGCTGTATGAAAATGGAGGTTGATCCACAGGCTGAGAAGGGAGACGACAGTTGTCATACCAGGAAACATGCGAGGTTTGATCCTGCAGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGAACCAATGCTTCCAGATGACATACCTGAGTTACTTCCTGAAATGAGGCCATATCAACGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAAGGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCTGTTTCATTCTCCATTATGTGTGCCTGTTGATTTTCTGGACACAAGTTCCAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTACCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCCTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTATGCTCACCGGAGATCAGCATCTGAAAGTGACATAATAATTGATTCAGTGCCACCAGTTAACGAGGATAAAAAAGTCACTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTCAGTGAAAGTCTTAAATATCAAGGACTATGGGTTCAGTGTGACATATGTGATGCTTGGCAACATGCAGGCTGTGTTGGTTATTCACCTAAAGGAAAATCACTAAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACCATAGCTGAGAGAGATGGGCAATATGTGTGTCAGATGTGCTCTGAACTAATACAAGTTACTGAATCTCCCATTGCCTCCGGTTCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGTCATACGCGTCCAGGCTCCTTGAAAATTTGTGTTTATGAAGGCGTGCGAGACTCGTCTTTGTCCAATACATCTCCAATGGATATTAGTGATCTTGCCAGTGCTGACATTGTAATAACTACATATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTGATAGACATGAAGGTGATCGTCACTTTTTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACTAGAATATACTGGTGGAGGGTTTGTTTGGACGAGGCTCAAATGGTGGAGAGTAATACTACTGCTGCCACTGAAATGGCTCTGAGACTCCATTCAAAGCATCGTTGGTGCATTACAGGGACCCCAATTCAGCGAAAGCTTGATGACTTGTATGGACTTCTAAGATTCCTTAAAGCTAGTCCTTTTGATATATACAGGTGGTGGACTGAAGTTATTCAAGACCCTTATGAGATTTCTCTGATTTGTCATGTCATGGATCGAAGCTGTTACACCATACTTCTGCAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGAATTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTAGCAGATGAATTGGACCTTCCATCCCAAGAGGAGTGCCTCTCTTGGCTTACACTCTCACCAGTAGAAGAACACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAGAGTTTGAGAAATGATATTCTTAGTAGAAGAGTCCCAGGTTCTATATCTTTGAGTGGTTCCTCTGATCCTTTAATCACTCACACAGAGGCAGGGAAGCTACTGAATGCTTTACTCAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTGCGTTCCCTACAGCAGTCACCTATGACTATGGAGGAAATACTAATGGTTCTTATAGGCAAGACTAAGGTAGAAGGTGAGGAAGCTCTCAGGAGGTTAGTTGTTGCTCTGAATGGGCTTGCAGCAATAGCTATAATACAAAAAGAATTTTCTCAAGCTGCATTGCTGTACAATGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTATTAAATATTCACATTCATCATAATCTTGCTGAAATACTCCCTCTGGCTGCAAACTTTTCTTTGATATTGCCATCCAAAGGGAAACAATTCTCCGAAACCTCTGCAGTTAAAATGACCAGAAAGCATTTTATTGTAAAGGATGATCATGGTCTTGTTAAGAGGTGTAAAATAAGTGGCAATGATGACATAAATTTAACAGTGGCTTCTGCAGAACCATCACAAGTTGCATCTAGCCTTTCTGAAAATAACTTAAATGAGGATTTGGAATTTGATAGTTTATCTTCCAGTTCTGTCCAATCTCTGATAGCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTGTTCAGTTCAAAGCTAACTGCAGCTCAACAGGAGTTTCAAAATTCTTACATGCAGGTAAATGTCTTTACTAGCTCTTAA 3069 0.4044 MGRRKSKPHRSGGIILETNATAETELGKQNVVEAGKEAKDSCGDIDKPYFVEVDRSGWLSSEHLDISEVVLSDLNLREDFSGFELSEDFYQDPQYVLRFRVCNVSNVLGRIKLGHWPVLPYTDIQLEFVKRAMVDNVESCTVLLSGTFDGPDEGVSGLVHLANLKFVTLRAVLGIRLSEEITSLRVRIEVLKSAFDACESLLEGSRQLWKKSMMNVMSWLRPEIMTSEVRYGLGSCMKMEVDPQAEKGDDSCHTRKHARFDPAGFYEAIKPSKAEPMLPDDIPELLPEMRPYQRRAAFWMVEREKAREESQGERERNLFHSPLCVPVDFLDTSSKMFFNPFSGNISLYPETSSPYVFGGILADEMGLGKTVELLACIYAHRRSASESDIIIDSVPPVNEDKKVTLKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHAGCVGYSPKGKSLKSKQGCESKTYKTTIAERDGQYVCQMCSELIQVTESPIASGSTLIVCPAPILPQWHDEIIRHTRPGSLKICVYEGVRDSSLSNTSPMDISDLASADIVITTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKHRWCITGTPIQRKLDDLYGLLRFLKASPFDIYRWWTEVIQDPYEISLICHVMDRSCYTILLQKGDMGAMEFTHRIFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILSRRVPGSISLSGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLIGKTKVEGEEALRRLVVALNGLAAIAIIQKEFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLAANFSLILPSKGKQFSETSAVKMTRKHFIVKDDHGLVKRCKISGNDDINLTVASAEPSQVASSLSENNLNEDLEFDSLSSSSVQSLIAECEDSKQKYLSVFSSKLTAAQQEFQNSYMQVNVFTSS 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi47g00004 1022 Gene3D - 482 727 IPR038718 -
Sebi47g00004 1022 CDD PHD_TCF19_like 416 481 - -
Sebi47g00004 1022 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 27 1017 - -
Sebi47g00004 1022 Gene3D - 345 397 IPR038718 -
Sebi47g00004 1022 SMART PHD_3 414 482 IPR001965 -
Sebi47g00004 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 678 IPR027417 -
Sebi47g00004 1022 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 465 650 IPR014001 -
Sebi47g00004 1022 Pfam SNF2-related domain 292 802 IPR000330 GO:0005524|GO:0140658
Sebi47g00004 1022 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Sebi47g00004 1022 SUPERFAMILY FYVE/PHD zinc finger 411 484 IPR011011 -
Sebi47g00004 1022 SMART ultradead3 285 657 IPR014001 -
Sebi47g00004 1022 CDD DEXQc_SHPRH 289 706 - -
Sebi47g00004 1022 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 481 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi47g00004 Sebi-Chr47 11708 17295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi47g00004 489 800 RAD5 or RAD16-like Gene Family AT5G22750 30.284 7.73e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi47g00004 SNF2_N 1.7e-86 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi47g00004 K15710 - gmx:100776659 1684.46