Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi479g00056 ATGGCCATTGTATTGGCCAATGGAGGGGGCAAGCCACCGGATTGGCAAGATTTCACTGGTATTGTTGTGTTGCTTATTATCAACTCAACCATCAGTTTCATTGAGGAAAACAATGCAGGCAATGCTGCAGCTGCTTTGATGGCTGGTCTTGCACCCAAAACCAAGGTTCTGAGGGATGGAAAATGGAGTGAGCAAGAGCCATCAATTTTGGTACCAGGAGATGTGATTAGCATCAAGTTGGGAGACATTGTCCCTGTTGATGCCCGTCTCTTGGAGGGTGATCCTCTCAAGATTGACCAATCTGCCCTCACTGGTGAGTCCTTGCCAGTCACAAGGCACCCTGGTAGTGAGGTCTTCTCTGGTTCCACTTGCAAACAAGGTGAGATTGAGGCAGTTGTCATTGCCATTGGTGTCCACACCTTCTTTGGTGTTGACATCCATTGGGCTTACAGAGATGGTATTGACAATTTGTTGGTGCTTCTCATTGGAGGTATTCCAATTGCCATGCCAACTGTCTTGTCTGTGACCATGGCTATTGGATCTCACCGCCTAGCTTCTAGGACTGAAAACCAAGATGCCATTGATGCATCAATTGTGGGAATGTTGGGTGACCCCAAGGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCCTTCAATCCTGTGGACAAGCGCACAACTATTACCTGCATTGATAGCAATGGTGACTGGCACAGAAGCAGCAAAGGTGCTCCTAAGCAAATCATTGAGCTTTGTGCCCTCAAGGGAGAGACTTTGAAAAAGGCCCACAATCCATAG 801 0.4782 MAIVLANGGGKPPDWQDFTGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEPSILVPGDVISIKLGDIVPVDARLLEGDPLKIDQSALTGESLPVTRHPGSEVFSGSTCKQGEIEAVVIAIGVHTFFGVDIHWAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLASRTENQDAIDASIVGMLGDPKEARAGITEVHFLPFNPVDKRTTITCIDSNGDWHRSSKGAPKQIIELCALKGETLKKAHNP 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi479g00056 266 Gene3D - 186 263 IPR023299 GO:0000166
Sebi479g00056 266 Gene3D - 52 136 - -
Sebi479g00056 266 PANTHER CALCIUM-TRANSPORTING ATPASE 185 254 - -
Sebi479g00056 266 NCBIfam HAD-IC family P-type ATPase 21 140 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi479g00056 266 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 184 254 IPR023299 GO:0000166
Sebi479g00056 266 SUPERFAMILY Calcium ATPase, transmembrane domain M 6 187 IPR023298 -
Sebi479g00056 266 Pfam E1-E2 ATPase 51 143 - -
Sebi479g00056 266 Gene3D - 14 143 - -
Sebi479g00056 266 SUPERFAMILY Calcium ATPase, transduction domain A 52 143 IPR008250 -
Sebi479g00056 266 Gene3D - 149 185 - -
Sebi479g00056 266 FunFam Plasma membrane ATPase 52 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi479g00056 Sebi-Chr479 747972 749528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi479g00056 1 265 Primary Pumps ATPases AT3G42640 62.670 9.71e-129 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi479g00056 K01535 - gmx:100778065 394.815